ca20219cf9fa4c54b2e59229506499bd *DESCRIPTION
36cd5c3537100f06a71738c1b541f9c8 *NAMESPACE
c13a232041c4bfc9b8bd6a6f7209b93b *R/GUIDEseq-internal.R
b3736c785b6cce5276957dd66f24a490 *R/GUIDEseq-package.R
5cbd5d9292d0a01ec04ea9bba75b1522 *R/GUIDEseqAnalysis.R
14c518c85467ab47fdc344de654c0024 *R/PEtagAnalysis.R
cac32759ede1dd1439082d52f7b37d47 *R/annotateOfftargets.R
9f6dcc9732238b07b6a09f9a933368c5 *R/buildFeatureVectorForScoringBulge.R
9d2f3f2de7a8c8e72726a0ad9c21fd28 *R/bulge-internal.R
32978df7dc1eada51c4aa2f307e83df5 *R/combineOfftargets.R
621d13d6de11088e06cc0472e31659b0 *R/compareSamples.R
1bf6049e1a4ab88c9e2b02b24570db75 *R/createBarcodeFasta.R
8205eed32460b30d3cd50929db618939 *R/getAlnWithBulge.R
4515604f2cd27a1442d730b41ec18a0d *R/getBestAlnInfo.R
0bd2f79256e144cce9a012afe28f8d24 *R/getPeaks.R
60d826556c7484e8e129c00ac37eed07 *R/getUniqueCleavageEvents.R
a4fb8970671300589622d4be37b8e7e2 *R/getUsedBarcodes.R
df5279fbb61bb71af099c611a76e9bda *R/mergePlusMinusPeaks.R
b415f75f44dc72f4917cf1f4fdb78069 *R/offTargetAnalysisOfPeakRegions.R
7689356db2dbda08eb256462dcb7a3ba *R/offTargetAnalysisWithBulge.R
13e2a29d91c8e3dd6b815dd9df994f9e *R/plotAlignedOfftargets.R
f2de05fcc1b1f96465c9f7cfe9d78b39 *R/plotHeatmapOfftargets.R
8da0cb5a70f12372ce68f3ef4a888798 *R/plotTracks.R
be32d58428104f5a06809f01363a2167 *build/vignette.rds
0378cd0305c3d239fdcf7eb8aa32db92 *data/peaks.gr.rda
89b8ffe8526fd20df18dcc14e1df8ba3 *data/uniqueCleavageEvents.rda
94dfe786d6476283636d084a6246b5b1 *inst/CITATION
54341a3c829bb8161d403f820c4cc0e0 *inst/NEWS
b6488430a2040b3042a44cc9544ad8c8 *inst/doc/GUIDEseq.R
a12b7d90bbc4690ce8eb59ae59d379d9 *inst/doc/GUIDEseq.Rnw
dc5ac356e2b8c6c600c98a5c93478d4a *inst/doc/GUIDEseq.pdf
6d462cbcf8462e0618db482985b5dc07 *inst/extdata/1450-PlusMinusPeaksMerged.bed
2d16d206663d3af40464747ff656df01 *inst/extdata/1450-chr14-chr2-bulge-test.bed
970b5ab053ab03e33d43fba1b391db2b *inst/extdata/1450.fa
6ae5cc03a9064b3b8c045974e6312493 *inst/extdata/1450peakSeq.RDS
b0c7dfbde051e95b85ec0614fa4f34ea *inst/extdata/InsertionInOfftarget.RDS
50297a8719b488896579a84003599b9e *inst/extdata/NatureBiot2016SuppTable19DoenchRoot.xlsx
4be7161445eba0fb1efe41baf9801ce0 *inst/extdata/OT71_Bulge_example.xlsx
b923ac992fe938c6932ce93899d61cc2 *inst/extdata/PEtagAnalysis_testthat.RDS
9e99a4998da29c0001658021a5163246 *inst/extdata/T2.fa
652b596e1a437cd3070bc7afb64c423f *inst/extdata/T2plus100OffTargets.bed
66e1e37c8fcbad3c1449e64470a6dff4 *inst/extdata/UMI-HEK293_site4_R1.txt
ce076916c5f6413f9a8d3ada640842d6 *inst/extdata/UMI-HEK293_site4_chr13.txt
dd11b41829b142e2e342c1b218ff6d9a *inst/extdata/UMI-testGetUmi.fastq
c8234ec0d8ba00da7a812b2cd3ebffb0 *inst/extdata/alns.RDS
fda6af97d15bbce462989ce927afab3c *inst/extdata/bowtie2.HEK293_site4.sort.bed
66bbe562e6f541fb3e18109943e4634f *inst/extdata/bowtie2.HEK293_site4_chr13.sort.bam
b6b49683d0ad761767064a22b9220dfe *inst/extdata/bowtie2.HEK293_site4_chr13.sort.bed
17ace7845a7843ed3b20e253f184e194 *inst/extdata/cleavages_testthat.RDS
d098930d2fc4ffa443cab7f7f537dd27 *inst/extdata/consecutiveDNABulge.RDS
7d8203570ded2c56bb3a6c1ab7cf382d *inst/extdata/consecutiveDNABulge.bed
3cc607f608dd2f8fb641553e22b34be1 *inst/extdata/consecutiveDNABulge2.RDS
e00a39c599e36b5edc6781b639d2f1c0 *inst/extdata/forVisualization/mergedOffTargets.txt
bd7f52a41a93c4ae91673d151c4044aa *inst/extdata/forVisualization/offTargetsInPeakRegions.xls
73a8dc03ae19de77802396c5adca3e93 *inst/extdata/gRNA-PlusMinusPeaksMerged.bed
7f16701fa8d5ff205f1d1eaf57a2f000 *inst/extdata/gRNA.fa
d73caa0b0f41bf4fc8a3f6e232e71ac2 *inst/extdata/getUmi.pl
0d4bd203578b0450c15773995ba57a4a *inst/extdata/p5.index
49f921d7e27b31032c29a9f7d960d212 *inst/extdata/p7.index
966348620cea51b2c725c536742096e4 *inst/extdata/pa.f.RDS
57df1ec44c80e9706f306f0b9a321c9b *inst/extdata/pa.r.RDS
fdd87fb94baff601d388cf47d0a082f5 *inst/extdata/sample1-17/offTargetsInPeakRegions.xls
94e47eb903856eec308dce7801baf1c8 *inst/extdata/sample2-18/offTargetsInPeakRegions.xls
f502d2ebfaac264dd8982782083071d1 *inst/extdata/sample3-19/offTargetsInPeakRegions.xls
d20361464e4c976c15ee66c4106dfddd *inst/extdata/sample4-20/offTargetsInPeakRegions.xls
4ccbab642cde1950063994c71317d406 *inst/extdata/sample5-21/offTargetsInPeakRegions.xls
1a7c311a1dc404e4581cb1b2d778145b *inst/extdata/sample6-22/offTargetsInPeakRegions.xls
c7fc6e066b15b93c5349835045947ddc *inst/extdata/sample7-23/offTargetsInPeakRegions.xls
c9aad645dfb7c07f9778c9cd961f7773 *inst/extdata/subjects2.RDS
b9580f92a83bba82392585d328d52606 *inst/extdata/testCFDscoringWithBulge.RDS
12097d993bfe37d33ba51cac7946a0c3 *inst/extdata/testGetUmi/testGetUmi.fastq
cfd93742b1771fd018675c36d9f87c85 *inst/extdata/testPeaks.rda
0dce18622a20f7c2155b17d356685844 *inst/extdata/testbothRunSum.rda
16ac06243a1dc3d604dd97d5cd5d9281 *man/GUIDEseq-package.Rd
d24579203f375b8bd98bbac82aacf15b *man/GUIDEseqAnalysis.Rd
b989899469315077cb6c5974fd23bce4 *man/PEtagAnalysis.Rd
54999afdf704e6512eedffb167b67c6e *man/annotateOffTargets.Rd
155269b3158f8ff6c4b2b588b18343e9 *man/buildFeatureVectorForScoringBulge.Rd
d8bcd1b6fd77382d21c3be103d377907 *man/combineOfftargets.Rd
7a7b80906a80ff70e5973d6e5e0b0065 *man/compareSamples.Rd
e9b9fd7521786fc60fd765353b0e0794 *man/createBarcodeFasta.Rd
26d7b79a42da659c48cc308265d71cb0 *man/getBestAlnInfo.Rd
9555a78ffd81673ea3fc85dbbfc5cbf6 *man/getPeaks.Rd
efe53d5350a6282d333bc3d069db5878 *man/getUniqueCleavageEvents.Rd
ab3c8cd89d8a10b9286aec71906b24b7 *man/getUsedBarcodes.Rd
957adbe1e05939dff80efe74451ccdcc *man/mergePlusMinusPeaks.Rd
b7121b22e3ff41385771c35771024f9b *man/offTargetAnalysisOfPeakRegions.Rd
2e2bf3ceb66908a91fc03b2a0128d339 *man/offTargetAnalysisWithBulge.Rd
7857d66a9439e957f462fa490bfa0985 *man/peaks.gr.Rd
e75eab0446cfcdc57a6bd946642f11f4 *man/plotAlignedOfftargets.Rd
2d1866a984f63cd33f1f99719272c98f *man/plotHeatmapOfftargets.Rd
4509ebe7a36c305321e2d7548c69e61d *man/plotTracks.Rd
86907b2668af9c02baaf6a67d8812288 *man/uniqueCleavageEvents.Rd
9bfa62a6fb67a5fcb58c2d07c71744e1 *tests/testthat.R
12fab088f554549bec43ae6714222b8e *tests/testthat/test-GUIDEseqAnalysis.R
892b46eced554efde36852257209b86a *tests/testthat/test-PEtagAnalysis.R
2e2f9480546f63d1d9876f399acb2480 *tests/testthat/test-buildFeatureVectorForScoringBulge.R
90e05c8ff576050bfffe3ad481b20ace *tests/testthat/test-getAlnWithBulge.R
b06a927eedf8c2d30aeb3be00ff34e71 *tests/testthat/test-getBestAlnInfo.R
259e857bbf6d588f77948e79aae4e7b1 *tests/testthat/test-getUniqueCleavageEvents.R
ad6d76453acbb42bd8bc2fdf32586586 *tests/testthat/test-internal_bulge.R
26a50658eaab096ff23947b3b410fa10 *tests/testthat/test-offTargetAnalysisWithBulge.R
a12b7d90bbc4690ce8eb59ae59d379d9 *vignettes/GUIDEseq.Rnw
