21f6d7d9fe941e9ac7e2e15ba49e6cc5 *DESCRIPTION
d30f99502234a5fdf1fc79bf18c04bab *LICENSE
c24ba36e67bb138edb5bad883e0aa35f *NAMESPACE
051f4891ff0242a94b5dd4697457ccef *R/AllClasses.R
94ec29a14bd055691f3b6c1f15537fde *R/AllGenerics.R
64ad24594a634cd3832acb52dbe0048e *R/AllUtilities.R
a43d4302728a5c14e66754d6a1115cfe *R/GBScleanR.R
1f43db59a5c35c61c76d5b6a4a3efe82 *R/Methods-GbsrGenotypeData.R
ba4f115de40f918c57ee3466829b1b95 *R/Methods-GbsrGenotypeData_HMM.R
e514fae9891eefc82577fcaef64ac86e *R/Methods-GbsrScheme.R
ed87e71d7efa88d437f2e168ec30699a *R/PlotFunctions.R
68894f909c86c0cbeb066928a33e42d1 *R/RcppExports.R
9c066f4b76cc16ecf2da5a91d5219f57 *README.md
c131de1c29e370647c881a6249b16488 *build/vignette.rds
ef1e6aaffc2f3484c8e4a8cf87a0f704 *inst/CITATION
a73156e4d499e83c9fb213f6db828803 *inst/GSBcleanR_Icon.png
c3e5b84358e7cb1fc9d8d06fc171e7f5 *inst/NEWS.md
b4c35e2a0ff5aa692c3cef7d81917b11 *inst/doc/BasicUsageOfGBScleanR.R
7e8ca3b9d9628274f5d371cc6415456b *inst/doc/BasicUsageOfGBScleanR.html
41eba3a0bbf2393eba01cb02cd20f081 *inst/doc/BasicUsageOfGBScleanR.rmd
319e094273cad46239f1e80a618d1b78 *inst/extdata/sample.gds
63952e57261a505b86fc30c40b46ac06 *inst/extdata/sample.vcf
824b62c339159d963836640bc129a521 *inst/script/AboutSampleData.txt
e114e799223f36af2aa5862ffba0cfe2 *man/GBScleanR.Rd
4743c9f75f4467773eece7a4982a322a *man/GbsrGenotypeData-class.Rd
f7ec8368e95d214a9df0f9a05d6d92c0 *man/GbsrScheme-class.Rd
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e5b85e42bc7cbefc993b236db0976b5f *man/boxplotGBSR.Rd
bc88dcbeb0999e55bb74860d51e4eb85 *man/closeGDS.Rd
bc18876fa4173867af877afee8d780bf *man/countGenotype.Rd
f8f79a741f62c00a642ed17d1ea7106e *man/countRead.Rd
bdc0981a14c07c54e95e994739b41dd4 *man/estGeno.Rd
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6df3127e4ed27469c244e42f0ed8411d *man/gbsrGDS2VCF.Rd
7183473c9dfd315a0cea57107c81307d *man/gbsrVCF2GDS.Rd
a159ad650b842a295b75a09c08fa06fe *man/getAllele.Rd
f49696a321c8f3bd9e96a2b14522f476 *man/getChromosome.Rd
c79535d9f4dd71f250b9dadd542fe077 *man/getCountAlleleAlt.Rd
cfb89a4294dae3843bdac65136618b95 *man/getCountAlleleMissing.Rd
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4688a4268e592d39ee8b6fa5d9234ed1 *man/getCountGenoAlt.Rd
2950eeeee9492372f1db7857cd46d3b3 *man/getCountGenoHet.Rd
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db597ecdf4f646ab95fd4fc029910dde *man/getCountReadAlt.Rd
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741de3c4b17e5d16aa64b10140911915 *man/getFixedParameter.Rd
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7ef8a205d098d6759238683840a08771 *man/getInfo.Rd
253cde86805f136b84d0ee0a1fe6bd45 *man/getMAC.Rd
33f42843598f222e1efc78359669c4c3 *man/getMAF.Rd
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1ed951b7553f672830cfae0b7e1e01f2 *man/getMeanReadAlt.Rd
14febc1f55fea34b85c868cf47ada331 *man/getMeanReadRef.Rd
eaa1edfe6c36c8c848b9875ee8c14023 *man/getMedianReadAlt.Rd
c6b9b672372005e3b178a4270c9b721b *man/getMedianReadRef.Rd
84db66b09eefc03e8840842859099d65 *man/getParents.Rd
e3492486b90567af74d5a96507ee0ce7 *man/getPloidy.Rd
43718af08b34ac0ba4d5dc209427e6e5 *man/getPosition.Rd
348726d91946ead60ed2827c774d2541 *man/getRead.Rd
ce8065da635e03861274e64f1b74b5dd *man/getReplicates.Rd
db5fcdec49d68bbbe1126d359451c941 *man/getSDReadAlt.Rd
e2f89178a90d42d083218c3966874b6f *man/getSDReadRef.Rd
199a3a2fe83b9ab560dc1738a5b25432 *man/getSamID.Rd
a4148f5ffb9624d1375b279e888d797e *man/histGBSR.Rd
8111e8ecb55da0d3b28019ac643a3599 *man/initScheme.Rd
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50d392df606621fbf8c420bc35208c9d *man/loadGDS.Rd
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9fef9978851fb5fa22a4ed37b2988ef6 *man/nmar.Rd
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69246a515cfbdbfec8b31a496d94e6a9 *man/pairsGBSR.Rd
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21f82c8ed76d5faac021e4f95f0232c1 *man/plotReadRatio.Rd
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7e54c5904c529551faf8d648a9f7dd32 *man/resetFilter.Rd
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9054fc3f7227e584444d324aa8948d39 *man/setCallFilter.Rd
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1eb32c1b47cb00a2bcba5265960e1af4 *man/setParents.Rd
821f787bc7d12a375dc06433a7b0b9c4 *man/setPloidy.Rd
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f0bfda729739e4901920f3afdaaeaf72 *man/setSamFilter.Rd
df3fbfd1a1c12a94def3f17d3c9ae778 *man/showScheme.Rd
2cbb9cf1e56f05079a4d2bd42b6fec24 *man/thinMarker.Rd
ead1e5dc3beb129b0618df9be870c294 *man/validMar.Rd
006b72b3fcf7441ec4861f0f7297465c *man/validSam.Rd
375e639950108177d4cf38d08fb08640 *src/Makevars
1344f2b0991ab305a1a99893493c907d *src/Makevars.win
17d45881da4990b5cc316e3073af9c07 *src/RcppExports.cpp
f381ed08e1d4eb74e8d4374cd032c889 *src/gbsrCalcProb.cpp
f35258b0a88c923d13b94cf95801967c *src/gbsrFB.cpp
91f1472d695c6031907db22821783e55 *src/gbsrIPO.cpp
d34ddf503bf7feec2b221f9e326e4c9f *src/gbsrStats.cpp
fffd9fb194ba534e8d8d78679e533e98 *src/gbsrViterbi.cpp
420b1e739de1bba37fab6cb7ad147f44 *src/gbsrcalcprob.h
c36c177641097c505a77bac2286beafc *src/gbsrutil.cpp
2ff567443875227d7ad1d34fa45cbf68 *src/gbsrutil.h
8f6ad36d2696c6e3f4e6efab0248e43f *tests/testthat.R
1d5b46a37b2e0e8dbe113a3dafb33499 *tests/testthat/debug_01.R
3f36768f35e78596d2e878682f59dea5 *tests/testthat/test_01_getters.R
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af13c9589fc09f569c6e283bb3ad2d2e *tests/testthat/test_03_countGenotype.R
073f3ab995b9a7e4a34246457560940a *tests/testthat/test_04_countRead.R
1aa26b0ab58d21b8b4be3ddb6d53fec4 *tests/testthat/test_05_filtering.R
77a66578cd848c01c5d5b5669b65c146 *tests/testthat/test_06_gds2vcf.R
0951505b1eefb3bbfcbd0c1a33df848c *tests/testthat/test_07_estGeno.R
41eba3a0bbf2393eba01cb02cd20f081 *vignettes/BasicUsageOfGBScleanR.rmd
0e72177fb320ed84b444de46c7fe9d66 *vignettes/references.bib
