d09bfe7d7f2a6bedc50f0abd12a12bd8 *DESCRIPTION
c7b807e4010deccb6792632654ad6e77 *NAMESPACE
b7448f2c002fe30c072533a24de3ca04 *R/0_FlowSOM.R
324d97405407a0b25ea745a5bf7028bd *R/1_readInput.R
92d0cc22e60940b05b735d1ecd24ff10 *R/2_buildSOM.R
15a282779d1f55e77804ab4b5cad06f2 *R/3_buildMST.R
df0950d18b98eef694dbcf0df491ca35 *R/4_metaClustering.R
e79757d0297ff26807797194fa45431b *R/5_plotFunctions.R
31de1d616a661e96295cc5e75b710b75 *R/6_deprecated.R
2df84ffd6899b9d018eecc2d55b20b67 *R/utils-pipe.R
aa4821614de60f946d6a9659a89db114 *R/zzz.R
0b947b32c99d27e2b0182d7282eb3b3c *build/vignette.rds
5af32e6ee3c3772266daa9b7340a10c6 *inst/CITATION
291d0fa7af60137b9a77e4ba801b2049 *inst/NEWS
26e1db22fe9829127e99053e2d804d62 *inst/doc/FlowSOM.R
6213aeff9a552d08310dadc6dfa0b40b *inst/doc/FlowSOM.Rnw
b8b85847c577a6000bc44f15b39d98fc *inst/doc/FlowSOM.pdf
4dea3a558a9d2d84fe519bbad88131fb *inst/extdata/68983.fcs
ed2227d706e11d10086211f2358250ac *inst/extdata/gating.wsp
a2aada1f5f6dd7e76f688ff24433db6b *inst/extdata/gatingResult.csv
7ebc56487065b94fed45f9f244f327cd *inst/extdata/manualGating.xml
9e2cc9937eae16e30eb557c67d215d01 *man/AddAnnotation.Rd
d3ca859c52c7d99b150b4a0e0189996e *man/AddBackground.Rd
c8723ba57f14a50e22236cb1ac8a2b1a *man/AddFlowFrame.Rd
e94030c0c780bdbc541d4fc34989b7ae *man/AddLabels.Rd
3276a891c66a8d2404ea7b3f536b09b7 *man/AddMST.Rd
6db45e80963e4d8ddc3f25629752ded3 *man/AddNodes.Rd
bab4faf046c35a794141b501fbdce94c *man/AddPies.Rd
a454fc9f26514d994991e705bc24bfbe *man/AddScale.Rd
196d5978e87a3407756926ed8b771b26 *man/AddStars.Rd
9ad4ed5852ea36aac0ca74530927bf7a *man/AddStarsPies.Rd
ab584fd03fc6b4421112994994c99bb4 *man/AggregateFlowFrames.Rd
507e2759ff3d98bf051992d53ce932ec *man/AutoMaxNodeSize.Rd
b0b4d06b12226aae40267599c829e046 *man/BuildMST.Rd
a21f719f3a86516d8691b858627d167f *man/BuildSOM.Rd
d01a05d2d4a49470c5aca0812ba8bee9 *man/CountGroups.Rd
17fc1e8181af8677af9c7fd184f2b6d1 *man/Dist.MST.Rd
1b3e34da35371a174f87f6bab16a705d *man/FMeasure.Rd
119ea633bfb61052447e2d42464a1ba7 *man/FlowSOM.Rd
e72cfd1a4c9f5293e293ea4c2ba059ac *man/FlowSOMSubset.Rd
78861390f4383d35723fef118abae9d7 *man/FlowSOM_colors.Rd
2d574cbd8bc406b3e32e360314a0e32e *man/FlowSOMmary.Rd
83130087c8d432b6e8369236b0ca2eeb *man/GetCVs.Rd
259703d519dbdde1c8b691452762b400 *man/GetChannels.Rd
37900d5f7f450001fba591869b88356e *man/GetClusterCVs.Rd
8e9743546aa64d6fe38d35f993037353 *man/GetClusterMFIs.Rd
b8e9bf0ce2ceb604f5a2deec0b2a946a *man/GetClusterPercentagesPositive.Rd
672bdf0de44b552dcc3d8b91d1185b93 *man/GetClusters.Rd
dd7069b4bdc88a36047d1e3849a42db7 *man/GetCounts.Rd
814bd267198ee084ea9fc940c1409b91 *man/GetFeatures.Rd
053a3504522a5e68adeb88e9950bb499 *man/GetFlowJoLabels.Rd
b30acaa3bda502c3e9795e9b773b0273 *man/GetMFIs.Rd
088e94d235a4a565b6cfe42a81ad3f0a *man/GetMarkers.Rd
8b5e7494a6c932d105f7917ea8fef077 *man/GetMetaclusterCVs.Rd
8fccbda18dbfbd6ff4fe331d99388954 *man/GetMetaclusterMFIs.Rd
ed41f5032448bf51abef29b661a63ee8 *man/GetMetaclusterPercentagesPositive.Rd
d970a731b785c52152545bab64386fd4 *man/GetMetaclusters.Rd
f26d0e69953d1a9c75b913213a4ff9f7 *man/GetPercentages.Rd
3180a3e95831bd36c7fd8c65bcef1303 *man/GroupStats.Rd
abbd154f885a653c53f5f17cd6a5c808 *man/Initialize_KWSP.Rd
e760f7a0ec0c1727c32f3fd2c38f1830 *man/Initialize_PCA.Rd
e3d3158e50462d8740c0914ed09ee586 *man/ManualVector.Rd
c698f3bdbb9d24a86959b189b81b69a1 *man/MapDataToCodes.Rd
fcb4f8897e8bea380be6f8231293133a *man/MetaClustering.Rd
d48436b741358342b4a89d0447b2ff41 *man/MetaclusterCVs.Rd
ceb71e5abfbb56109cbb76079fd45048 *man/MetaclusterMFIs.Rd
f20e70427caf4404525c81a220730cf1 *man/NClusters.Rd
60fdad1d5b57d40d8671c7011e4842a3 *man/NMetaclusters.Rd
7347400cec32654832ea9b6808afeea8 *man/NewData.Rd
ce393c5e1201a74d87abf50214f38d10 *man/ParseArcs.Rd
fc7edfffaf905b52aec8ae66eb7263f7 *man/ParseEdges.Rd
2ca377697a7183985c7011f905471c4a *man/ParseLayout.Rd
b8e475980a3db64091b2cb3adcd769b1 *man/ParseNodeSize.Rd
a7389ee30afff0214e7e904c8ea9cbb6 *man/ParseQuery.Rd
c08b178898fcd9634ab2e5eb9ad67e52 *man/ParseSD.Rd
576076d3de15f1a632da6cca04f79ee8 *man/Plot2DScatters.Rd
03d4dc4bea643cadc5aa11ea33eb9ec5 *man/PlotCenters.Rd
1ad7052c8ba4549d449a36152b5166fc *man/PlotClusters2D.Rd
c95c09db58b25e09d0c39fd7d5875c1b *man/PlotDimRed.Rd
6cb84250a87e5d7c868857ac622a929e *man/PlotFileScatters.Rd
e74a19c5575b98de621a918f9b7738cd *man/PlotFlowSOM.Rd
a330d5faf122f578118dbb7bbc9b794b *man/PlotGroups.Rd
910b3511eb131e6eed747acf716bd618 *man/PlotLabels.Rd
64b56794f6e51cc2b3be28b6a9576a32 *man/PlotManualBars.Rd
7f1273599ae332e5927027771cdbb025 *man/PlotMarker.Rd
eeb237b73ffab54f9ae677855e9f69c4 *man/PlotNode.Rd
796fee468d7711e76767e703a7c036c5 *man/PlotNumbers.Rd
1d7972bc28c7764dc9e59206d1f92631 *man/PlotOutliers.Rd
67a4400fe76ecefc45b0bdb4203edd5b *man/PlotOverview2D.Rd
2778a0a76291d9b70dad2c6c285130df *man/PlotPies.Rd
870f91b850ed36ea19662b215b2edf26 *man/PlotSD.Rd
464c37f5f8c6f1a770b282417f90a758 *man/PlotStars.Rd
5dc5e8860551e44779c858526b858e44 *man/PlotVariable.Rd
07e5667cf7550650bb33a913d09dce06 *man/Purity.Rd
5713753250d880b3c9cbc3c5760f8a95 *man/QueryMultiple.Rd
cbc7d9817ebbc4585025e999738eba38 *man/QueryStarPlot.Rd
d5427aa0a718ef81ff98f8878ca91fb5 *man/ReadInput.Rd
acbf83974c8bf01b043a4668cf4e718c *man/SOM.Rd
22ea4acd91878ab1a10149fcd1ea6330 *man/SaveClustersToFCS.Rd
7390649c40586c4c57aef52952d07464 *man/ScaleStarHeights.Rd
b3a4c3afeaea41ed6295e504b44b33a4 *man/TestOutliers.Rd
c786650cf71ada5e32f832c976eecb3a *man/UpdateFlowSOM.Rd
f9e84fa46cdc84252771372c3255389f *man/UpdateMetaclusters.Rd
7516dd04657716f0312b1b6d787a97a0 *man/UpdateNodeSize.Rd
a813be4b32573c0384dd50aec1b587f0 *man/get_channels.Rd
01817e79f47c0d9ebf6e0b0c050f359a *man/get_markers.Rd
9ba70708ccff7c9ff13d4ed5971e7144 *man/gg_color_hue.Rd
562095ed444f5b67a9e2099461c69ce6 *man/metaClustering_consensus.Rd
4894ca10756199e25f914bfd34f517b0 *man/pipe.Rd
7fe052ae60f42348159e1bdb08a5ac2e *man/plotStarLegend.Rd
dcf10c7269d489f5d2799ca052a23a75 *man/print.FlowSOM.Rd
40f6e74f0ecd08b3269a377deb7429d6 *man/query_multiple.Rd
03519d923ea04a58ed8e6003ab3ca991 *src/som.c
6213aeff9a552d08310dadc6dfa0b40b *vignettes/FlowSOM.Rnw
