9c8b1e477968c4ccbd53ecda4b7ed16d *DESCRIPTION
c0989055b175b75bf6fb6daf02428222 *LICENSE
e71d7ec3b7a3377dc11541cd4f891415 *LICENSE.md
b4e4960880000060d8d10807c9101578 *NAMESPACE
cb670fec04c7306d65235f9604aebfce *NEWS.md
a994293d71b657d92f8c1b12c0f0f76f *R/calcAssocProbOR.R
c9d580168d807a07c70e424bc0a5e1dc *R/collapseDegCreToGene.R
7071210ef32049dfb0527fb2589bdeed *R/convDegCreResListToCreGeneScoreGR.R
0e4e13771c0a8d01e87a95944a07f55d *R/degCreBrowserPlot.R
36d8d602d8894cfb3b88c40d682e8726 *R/degCreConversions.R
642d0597aa2bb677c1b8a51dead6dc02 *R/degCreCore.R
3dbe809622b901d30d7b160c072745b2 *R/degCrePerDegFuns.R
1414d444f6c5e8d195dff076bfc91691 *R/degCrePlotFuns.R
18c9b38b83a3a51369dcef969ac2299a *README.md
7c351e7ac44293f654149216dda5f676 *build/vignette.rds
5004021242e486ff41ac196ba93476d2 *data/DexNR3C1.rda
e8890edd55527b40de50f28a4e459c5a *data/datalist
e2adaaa9829feec175e5c381d5e97b13 *inst/CITATION
4b50fd7370777edb9ffb1b90eddd0465 *inst/doc/degcre_introduction_and_examples.R
d101630a2728edc12c7664cfa4b867d6 *inst/doc/degcre_introduction_and_examples.Rmd
36ee1ef5bb4145cf41025c1b19a2d6b1 *inst/doc/degcre_introduction_and_examples.html
e2384b29fba00a44417930aa7694e08a *man/DegCre.Rd
8171a820e86d42fc0cc6824247d55703 *man/DexNR3C1.Rd
02d1a7adcb59f29a6a7f89051e910a70 *man/adjustRawAssocProb.Rd
8f2df69d852c202231dda542bc142023 *man/calcAUC.Rd
559e7b2c05e47299e44bf0a1c6abbf1d *man/calcAssocProbOR.Rd
2ed04ed4f4d736377fc26d2e58907e25 *man/calcBinomFDRperBin.Rd
0a4418b92f924f7a0c920447e0a9138e *man/calcDependIndependEnrichStats.Rd
07870fa6ac5d797720f5822825b2ef5f *man/calcKStestStatMedian.Rd
184e73501c8875773e53b17b8dde74d5 *man/calcPadjsAndEtpFun.Rd
307ddf26d37cc984cfcd3cc2a0d32982 *man/calcRawAssocProbOR.Rd
2dc13bcd01a7290accf59a2a12a021e3 *man/changeColorAlpha.Rd
8eda9ae77d6191143c8ddaf4fc989fb9 *man/collapseDegCreToGene.Rd
dc708d98435097809911947ef5fbeee9 *man/convDegCreResListToCreGeneScoreGR.Rd
8bc1324eae1de111ef1771d097173449 *man/convertDegCreDataFrame.Rd
4631b76d9cf40f55e860986d339dbcb8 *man/convertdegCreResListToGInteraction.Rd
44d592f8e8c45f238513f4acf7971840 *man/correctAssocProbs.Rd
ab2e2935a612b063c094c0d6e83c6784 *man/creGRToSignal.Rd
96c6e5dfce8486efcf605660023b0f18 *man/degCrePRAUC.Rd
da8d5112b0a8d0324d75c30654831044 *man/distBinHeuristic.Rd
82469dbd151f468e953e7beefaecd829 *man/fastKS.Rd
02c5251a4748a6e4af7cb70f2e6fdafb *man/figures/DegCreLogo.png
f3dac047313fa5f18fae1551807d5776 *man/figures/assocProbVsDist.png
54dd7f901c76c67b3d906f1b607ab2ba *man/figures/browserExample.png
88b09c6bd0eeaffdd87a531d5531aa88 *man/getAssocDistHits.Rd
daf294490645e4e35184caa90d644648 *man/getDegCrePlotRegionFromGene.Rd
e106d9dda33c221959f7aa355fdf9a42 *man/getDistBinNullAssocProb.Rd
28e169dd50ad081dec6267f40b0d5d85 *man/getExpectAssocPerDEG.Rd
c8520f4a6489348957859864caa57453 *man/getLabelYfromPlotgardenerObj.Rd
15d6dd4f06cc6edb68c6d49f90ef58a4 *man/makeDistBinChunkList.Rd
37c8d6d0b30a24ea3a36264bca42226e *man/makePlotGInter.Rd
cd8144b94d7f0e04ee0f0a2ef3d42c55 *man/optimizeAlphaDegCre.Rd
2ccfe42bd07ffbb44fc0d41366683837 *man/plotBrowserDegCre.Rd
fd499768d412d73a916fd120bc34da8a *man/plotDegCreAssocProbVsDist.Rd
9b5b3072e850f0cc841b9055ed29b25e *man/plotDegCreBinHeuristic.Rd
5458b1aaf29d139a6650afc01707158a *man/plotExpectedAssocsPerDeg.Rd
d561f515e22aadbe06e5e56f271350d6 *man/runDegCre.Rd
16292e9606b65b6f5a2f711a3e4d132b *tests/testthat.R
b016d4d9137a322d984860e7ce5bef37 *tests/testthat/test-calcAssocProbOR.R
0c19033744d8258931998701694fdb77 *tests/testthat/test-collapseDegCreToGene.R
d4928396c17ceb4f70ab832118616f7f *tests/testthat/test-convDegCreResListToCreGeneScoreGR.R
1c8d43ba2f82fdda402e8485d0449101 *tests/testthat/test-degCreBrowserPlot.R
defbb7aef7aaee0d49949f08172b1583 *tests/testthat/test-degCreConversions.R
6e1a31f9dd4bee720b91994610dbaaec *tests/testthat/test-degCreCore.R
f884cb4cf19660452603e95bf68645fb *tests/testthat/test-degCrePerDegFuns.R
8515c8b4560ffa2314be01ea8f361ac6 *tests/testthat/test-degCrePlotFuns.R
3e96636048647929da1975d6db289165 *vignettes/apa.csl
c45fbf39288befbb834ca62878dc68e6 *vignettes/degCreRefs.bib
d101630a2728edc12c7664cfa4b867d6 *vignettes/degcre_introduction_and_examples.Rmd
