6593b6bd1a40efe45dedef02367defd7 *DESCRIPTION
46f5f84eda36916eb72225e0dba3e6be *NAMESPACE
81d073061bbe34e0abbf5a885c4c41b5 *R/DEP.R
bd828ce2418e02be8cd70609edd86c66 *R/data.R
30cf847a821a944a78eaf8a3472275bc *R/enrichR_functions.R
24faf3ca8aa212719472d79cdb3f9b53 *R/functions.R
372b51556e654ce8c925df8ede05ceca *R/gg_theme.R
7cf18c1b71753402740cc8674a953fa7 *R/plot_functions_QC.R
123881d1d9ca879305d58ed66555394c *R/plot_functions_explore.R
9af59d359a2d6dcc4b5582026d4b2f00 *R/plot_functions_frequencies.R
80e67ec49553c1aee13cd4ac040e0e81 *R/plot_functions_results.R
ced16447b374518e8df3760c48abd893 *R/run_app_function.R
69207e25073531dcb3b4996f9d7b3b05 *R/sysdata.rda
eb4632822fcba83a351c46ca6db2b029 *R/workflow_functions.R
2fdd093571f926ff688682e7125c4bf5 *R/wrapper_functions.R
ec19de0282a176679b0489ddc8f1bc95 *R/zzz.R
8263991776a87b9c3f490ddd7d5fd73b *README.md
2a8b29a45bcd53e4546c7c52d65644d2 *build/vignette.rds
012ade611fe01ac5beee34cd66934dc6 *data/DiUbi.rda
53f1d3c0a6f619c84210e99eab6634d3 *data/DiUbi_ExpDesign.rda
c3a15d1eb709121b5fbe591ab6a441a8 *data/UbiLength.rda
1302a45ae3cce9fd1a840960cc031a38 *data/UbiLength_ExpDesign.rda
1be19941a8f679b70d3e370e5a62ca6b *inst/CITATION
a1f4063b5ec8436c9bfda6127a52ba43 *inst/NEWS.Rd
85374696589635879dcc0ff7f09f9bed *inst/Report.Rmd
28fdd407c68141582ebbb3d8cab82a8c *inst/doc/DEP.R
5ac4b50e09ec10edf35d5b40c0a66aff *inst/doc/DEP.Rmd
c86b262d7d034455ca88ed2eaf7a5253 *inst/doc/DEP.html
2d6efefdab7efa5f47f77f9da8806c6c *inst/doc/MissingValues.R
c279698a729e2c848cd8785a4d09e732 *inst/doc/MissingValues.Rmd
ca1e947b2f25555a007b4c43b9ad420b *inst/doc/MissingValues.html
38fe07740aa94c6189f3692f26394710 *inst/shiny_apps/LFQ/app.R
100b38af739f4bb9dc345c9abeeeb3c0 *inst/shiny_apps/TMT/app.R
22e7108c11a291be5eea6a1641495274 *man/DEP.Rd
5bfdd5bd7566447c522c61babeb31d64 *man/DiUbi.Rd
aa4293587f42e1623f02b066f53a1e93 *man/DiUbi_ExpDesign.Rd
15ba2d70a191d3e7ac5f2313ab1518f1 *man/LFQ.Rd
08c512140f464a1ccd683328cfa2687e *man/TMT.Rd
8b6df7b7f8d02f1704e27477c6a151e2 *man/UbiLength.Rd
bf3682836ddc2e21dbd930a498aef534 *man/UbiLength_ExpDesign.Rd
7318276afd00d845ed59d4ee99796ccd *man/add_rejections.Rd
3dc2c21a878f5a005b532afddf1b7dbc *man/analyze_dep.Rd
aa562f241a4724e1cfee42046a6c50b7 *man/filter_missval.Rd
5b98a498a6b2b56a1c2418316f62ea46 *man/filter_proteins.Rd
7df3c3ff0b913d6989170f0d7535a81c *man/get_df_long.Rd
f1aeba75c71cc8d3326fb5a663de7179 *man/get_df_wide.Rd
0dab372a034b67ce21b4cc49538d4592 *man/get_prefix.Rd
8ac3474535f579f0014be09983ab691b *man/get_results.Rd
d65eddca83348c20fd24bd65be88c8d8 *man/get_suffix.Rd
5a49e19a97f9a46f7be0a352db11f0be *man/import_IsobarQuant.Rd
bd997ab2ff131d623a9ea7d390be7abe *man/import_MaxQuant.Rd
c387956398e4e13faf2b092e2f8642e0 *man/impute.Rd
5618d6d990d50792a402480b2edded59 *man/make_se.Rd
5ea7798d1f289f641c9f4d966cef171d *man/make_se_parse.Rd
1d1ba74a614aa550335e0dbc1854e613 *man/make_unique.Rd
913a291247dad920146c641d3d96ae10 *man/manual_impute.Rd
5ae8c2b6d0b6d6bd99ba661ae28ab187 *man/meanSdPlot.Rd
d6189183f8d5ed8956c184285c842008 *man/normalize_vsn.Rd
811e84af8190b26418a7dc7bb71460c1 *man/plot_all.Rd
bc1057804d5928287a3ab1be13aa6300 *man/plot_cond.Rd
8f96e46e2f327941382a52c5e3d3508b *man/plot_cond_freq.Rd
20ad588616c1517c89874c5896cee9ed *man/plot_cond_overlap.Rd
d989102032b4cde570a82d2a7a0e2985 *man/plot_cor.Rd
85b282019f85e3f5c24452cb2649c5d9 *man/plot_coverage.Rd
f9f2d8a825a705377004c205e4b9aeba *man/plot_detect.Rd
75042d21d5516d0bdaa9670dcaa4643f *man/plot_dist.Rd
5c059f88e4cf84ca5c38b5152619f434 *man/plot_frequency.Rd
d780f4c618926f9b3e249e0543a4a744 *man/plot_gsea.Rd
4ba19383a41048736cf9e889850ddab8 *man/plot_heatmap.Rd
38d17344a3e0297c1d2d8cda16ed6fd7 *man/plot_imputation.Rd
1c7cf1d91a9dbcb7d0016cc98a1799f0 *man/plot_missval.Rd
e5f465a3207cc4d96c9e053628b8dca5 *man/plot_normalization.Rd
1b39bfdac48d0d582eb2d769019b26af *man/plot_numbers.Rd
cffcce8160c9898c2de461a3317b34c7 *man/plot_p_hist.Rd
e0648328c4974d67b3e79a6b75653716 *man/plot_pca.Rd
975b51135c3d87e6711c7cb089371250 *man/plot_single.Rd
9f210b9e8b7133fe66f83f8c176366ce *man/plot_volcano.Rd
40cc99bbc18bb9deee815f9dffcf30e2 *man/process.Rd
6fdfd79208c3f8d30f69d017ebad2675 *man/report.Rd
c67768aedddd62497e3fc902fd1fa6ec *man/run_app.Rd
a3b5bef37c97251f0a477d5775b7558a *man/se2msn.Rd
4b21676c78987d56792d86e27e2057f2 *man/test_diff.Rd
40723d17a09b36adbe8c50bd016d1e61 *man/test_gsea.Rd
07d23aae6b4bd66f8c8d842276bbd1a2 *man/theme_DEP1.Rd
357e518d8da8ec330b42106cd2217d0a *man/theme_DEP2.Rd
c52be912bca1ffe7f29866e9243adbb1 *tests/testthat.R
43c0c9d911f0f5a5222086742475c556 *tests/testthat/test_1_unique_SE.R
93c1e8ae3e2fbc1fc559bbc20a8a6019 *tests/testthat/test_2_missVal_norm.R
cd938955228b9a51d5f258bffcc471cd *tests/testthat/test_3_imputation.R
1e1a224be5fbd3d85decfb5bd33b717b *tests/testthat/test_4_differential_testing.R
7e5e9626154b153061530d0bdd90f248 *tests/testthat/test_5_plot_functions_results.R
b81e85db09c908f2a413a085a8e7e436 *tests/testthat/test_6_plot_functions_QC.R
45966bde4f19aa2a887549716b5c3f8c *tests/testthat/test_7_plot_functions_frequencies.R
922f12667daaf9ef7b4cf3034de22018 *tests/testthat/test_8_plot_functions_explore.R
e79f1f7502cc35ea07bf5358eef642e0 *tests/testthat/test_9_workflows.R
2fdce19f49ee12a6770881664444b411 *tests/testthat/test_9a_wrapper.R
0d7ee01f3565a4dc278ec0954c6aba98 *tests/testthat/test_shiny_app.R
5ac4b50e09ec10edf35d5b40c0a66aff *vignettes/DEP.Rmd
c279698a729e2c848cd8785a4d09e732 *vignettes/MissingValues.Rmd
