ce562049a4fb28daeca211f991256f03 *DESCRIPTION
0a1899da2d6de348416c62daad9948f7 *LICENSE
ed921b4dcebbf59847c0b9eeddc1d959 *NAMESPACE
4f376f66fb23f73e0f0a9a21acb6a6dd *R/DAMEfinder-package.R
4ceaddadc35ae2cd9e7550094a978dca *R/calc_asm.R
6cd8a45e2b43059fa4a25545fd15f3a2 *R/calc_derivedasm.R
b6588f2af2bae913b62756060ad1ff69 *R/data.R
88ed38d2524f2a1fe49669dfc6d3a21d *R/empirical_pval.R
0b4c193e658667e32f38fd7fdfef5353 *R/find_dames.R
d9aa137069dd4db15ea267356d299f38 *R/get_tstats.R
b49dd4bbfc3e942b0d70398c9af43be6 *R/median_tracks.R
18271ec9c11bdc575be57e11cd745a31 *R/methyl_MDS_plot.R
ce2adcf0e6b0b10a437cc78f9365930a *R/methyl_circle_plot.R
780a165293713cad290b24f4b959af23 *R/read_tuples.R
585f9e7181ea5c1fb32274bb19fd4c29 *R/score_tracks.R
33729de1027702ce72a116647bfe7ee0 *R/simes_pval.R
55b9d4008d0056f38f9d7ac30b59f751 *R/split_bams.R
07409dd7b3b6e2705072c36e0797629d *R/split_reads.R
71ad2c2fe38f037d3925783bf812e625 *README.md
001802f9df4ba66671fee71950d0569f *build/vignette.rds
61d8a09de10e1d23f2d1188b8096bdd7 *data/extractbams_output.rda
9d36f80af263dadf13b39a27ab00fa43 *data/readtuples_output.rda
09c65bc1d78a2a33bc7f5beb17207089 *inst/CITATION
502258d6beca9ba30bee7b2b7be8300c *inst/NEWS.Rd
9b7910a7efe1efc602c5c33cdb1d5270 *inst/doc/DAMEfinder_workflow.R
51496e813a34515be0e709d25d9addc1 *inst/doc/DAMEfinder_workflow.Rmd
3902ba7f62f9fdf6f65f484925305ae0 *inst/doc/DAMEfinder_workflow.html
daf558746caa459d128b1edcfd93915e *inst/extdata/CRC1.chr19.trim.vcf
a3fa6a42464200025a673ef030513998 *inst/extdata/CRC1_chr19.qs.CG.2.tsv.gz
0f29a7e50e6e2979be3a9a51014d1197 *inst/extdata/CRC1_chr19_trim.bam
1a7c9830c7d6b8b09906b1dc7121b473 *inst/extdata/CRC1_chr19_trim.bam.bai
9222a67cd3a6b0cfc18efd1355fcbc51 *inst/extdata/NORM1.chr19.trim.vcf
cbc710962aa110134e2d5afcf3ca86b2 *inst/extdata/NORM1_chr19.qs.CG.2.tsv.gz
8530eed239d8855e2491aa8c4283dccb *inst/extdata/NORM1_chr19_trim.bam
0289955249e6ca9dfc11d3857e8aca94 *inst/extdata/NORM1_chr19_trim.bam.bai
9cc429baf829fcceb7d0bf6d954f72dc *inst/figures/DAME_only30reads.png
819d71dc2155c348f38b8a8c04cd59f7 *inst/figures/DAME_snp_allsamps.png
77cb5e71d84ca11e26254618cb61321e *inst/figures/DAME_snp_allsamps_median.png
8b5f4d1f6c5300c3318e75cd6e4c7742 *inst/figures/DAME_snp_sampledreads.png
69b1d037d321c943b119a2019dc1c58b *inst/figures/DAME_tuple_allsamps.png
5ca20291a9dc0fabd5e7dd7377cf5d14 *inst/figures/DAME_tuple_allsamps_median.png
a9107c0f715cc46a7c8356fa1a6e1014 *inst/figures/DAMEfinder_workflow.png
cffe6fdf85143d33894cf85dd951b0da *inst/figures/damefindersticker.png
52f98e1f1b0a186bd57f463553e8f624 *inst/scripts/extractbams_output.R
d29bf6b8be58a52fb355591eb4d6e11a *inst/scripts/file_description.txt
0e79c5fc275fb6ab2c7f30b38347c4b6 *inst/scripts/readtuples_output.R
25d970e61240ded90f21864b166ffe9b *man/DAMEfinder.Rd
b1867d0da4c0a111cb58e819814fb2ae *man/calc_asm.Rd
931ad4e21dfd3b8421fb4cfa866a3e08 *man/calc_derivedasm.Rd
9cac73be3755ce6ec7953c995a90f807 *man/calc_logodds.Rd
a0d50598685fc7ca3e740adece64f70b *man/calc_score.Rd
d09d78838e1717dd4c1ddb142b8f1245 *man/calc_weight.Rd
781eee36d61e98e587b3ea4c80773b88 *man/dame_track.Rd
b4009a48fdf8dd78b21531087525fac5 *man/dame_track_mean.Rd
3ddaf97d906303cd27615690e51006ab *man/empirical_pval.Rd
2c10c2e60e0bc4693ba23365dffd77f1 *man/extract_bams.Rd
db6b5f13404802cccb97dac6fdcf1381 *man/extractbams_output.Rd
5d7941388aa8fa1c12834e51ce70da04 *man/find_dames.Rd
c3783d160d36f5e2bee9eefa3ade457e *man/getMD.Rd
90cb4120df5ffa5c99dc96d7b32d34f7 *man/get_tstats.Rd
9623faf583b8e1153a9a50200d3abf52 *man/methyl_MDS_plot.Rd
6535c714b768bddc64b983b599f8de79 *man/methyl_circle_plot.Rd
ef3db61440fbba9575bf38371c5eab20 *man/methyl_circle_plotCpG.Rd
fa920b9e0fcd24fbc7da4754dbbefa6c *man/modulus_sqrt.Rd
f530d9cca7ea5541e9c8e45beef2baea *man/read_tuples.Rd
f88a55257d10bac3fcfde9efdb13d762 *man/readtuples_output.Rd
4c609cc2aafcb0542bccd3c93e6fac14 *man/simes_pval.Rd
71d1d1a548c253fba502d5ae4a14c839 *man/splitReads.Rd
6bc7ed26ea5475df01731a0676035934 *tests/testthat.R
f3a18a6f0e97b2c82d63c4ca353ed1f3 *tests/testthat/test-dame_track.R
290b1bcb66281066870636a8f67e7f34 *tests/testthat/test-dame_track_median.R
fd18c2731bb8480079fe54e7fd004601 *tests/testthat/test-derivedasm_dames.R
bad7b2a19def347f1a31abab318fa9d8 *tests/testthat/test-mdsplot.R
c5b7181daa338f18f30342c3c7256c39 *tests/testthat/test-methyl_circle_plot.R
540094d0255d4374d8323702145ffebd *tests/testthat/test-split_bams.R
f167caf0277e10a8f9275e92bb82d43b *tests/testthat/test-split_reads.R
bdbb859332f01b44d029161a31332c68 *tests/testthat/test-tupleasm_dames.R
51496e813a34515be0e709d25d9addc1 *vignettes/DAMEfinder_workflow.Rmd
0de5b4d27b36ede0febecebc69952b47 *vignettes/papers.bib
