0557f95bb088c6b14fa63fe97b4ac4d2 *DESCRIPTION
2c6989a4160f54e587717dc36930757a *NAMESPACE
729e24e56f84284df60834a1adacd531 *NEWS
eee558aa7206ba5bec8bcb48fdfb9f00 *R/allClasses.R
d936c713344c81df29ddcd6caf9669f0 *R/allGenerics.R
d018eeb54008d03aa64825bd0b6ed325 *R/chicago.R
b06fc069e3138a21152bd9280a9bbca5 *R/chicagoData-methods.R
e0e086a44fa052b7b2974217f639044c *R/peakEnrichment4Features.R
537c510ec46e0a7e72cc2344126d175a *R/zzz.R
aa761715122a3ac277efeff3b9819361 *build/vignette.rds
be5c025eb1be7bfca21cf1dd10fac3fd *data/cdUnitTest.rda
2ab94a6733195eae1c19304bbdab987b *inst/CITATION
bb3d60cb8d1149043f2a499482394bbd *inst/doc/Chicago.R
5caadbf77b79d27c8ee9b62d4b1cd85c *inst/doc/Chicago.Rmd
cd3380e4ed5634540b9a4d976e95f6ff *inst/doc/Chicago.html
bc7339c0acdef5dd9556e786cd4108c8 *inst/extdata/unitTestChIP/featuresmESC.txt
9a3ab07f0a9d5bca66f6e69a301384e2 *inst/extdata/unitTestChIP/unitTestCTCF_ENCFF001ZQY.broadPeak.bed
50a37b4afbc409ab065ff1be6c0846a9 *inst/extdata/unitTestChIP/unitTestH3K27me3_ENCFF001ZJO.broadPeak.bed
3a0b059f32523b4c2c5c5c200a9a916d *inst/extdata/unitTestChIP/unitTestwgEncodeLicrHistoneEse14H3k27acME0129olaStdPk.broadPeak
f8fe5c018ac5126ad05082f3cf235030 *inst/extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k04me3StdPk.narrowPeak
77875efe530d66bbe85c38beb8edd4de *inst/extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k09me3StdPk.narrowPeak
d33768e766f58986b79f1786e9727304 *inst/extdata/unitTestData/unitTest_mESC_rep1.chinput
176bdad1ce209180fdb676818094ab67 *inst/extdata/unitTestData/unitTest_mESC_rep2.chinput
6d658c9192a9d45438425dd25195491a *inst/extdata/unitTestDesign/unitTest.baitmap
0093ffe703303e3a5d0b6e1a0ef6d660 *inst/extdata/unitTestDesign/unitTest.nbpb
b4bb6de635bb1205e293c61efb750efc *inst/extdata/unitTestDesign/unitTest.npb
60a904049b15186b76b54b9f7fcae9c4 *inst/extdata/unitTestDesign/unitTest.poe
d27a4f83d5f8dda72f4d99ebd8aa5742 *inst/extdata/unitTestDesign/unitTest.rmap
b70696ed8eea9b1051fa36f50518ad8b *inst/extdata/weights/GM12878-2reps.settings
bdaefdfe9a1bc018a82fd584a1b2e182 *inst/extdata/weights/humanMacrophage-7reps.settings
80d6c48f96a472892d2fe4d313a80930 *inst/extdata/weights/mESC-2reps.settings
00493d128803b656d4b23f56cc2935a2 *man/Chicago-package.Rd
22e365ae82e460d1683f940ad349d899 *man/cdUnitTest.Rd
dfd6c59608ff9c1f6abb4921ac654cc9 *man/chicagoData.Rd
aae370f7772b5c0ee49a5a75ae699777 *man/chicagoPipeline.Rd
877901fd62789786e426fbbb956437be *man/copyCD.Rd
2c20e29d9e73e91c7a0f2eafd355f86f *man/defaultSettings.Rd
cef4d6bc1402273502caf6632f698eda *man/estimateBrownianComponent.Rd
68a4f9e6f3da7f70b924218a6a2736fd *man/estimateDistFun.Rd
917ce3619adb058fc33868467f26c105 *man/estimateTechnicalNoise.Rd
b7b3ae3aa8e0dfc7bbe3c55ee0fa0c54 *man/exportResults.Rd
edc272840d5111b3e75f0276308a592a *man/getPvals.Rd
dd41f4a685bd3714be2d198d87e0ab65 *man/getScores.Rd
328f907cfee83b5b2add1eb6f7b7a319 *man/getSkOnly.Rd
82812330ab3e8c4fc6c0f20a3ccd8d7a *man/mergeSamples.Rd
5bd9096c7149314ec38baee4eaedb9f1 *man/modifySettings.Rd
964ae931e28802bf77e4350239e860c1 *man/normaliseBaits.Rd
15e6135ed245e1926653b5b4012c5710 *man/normaliseOtherEnds.Rd
0f4bcd86c779a17d73b353f51d54890b *man/overlapFragWithFeatures.Rd
0d60e4e296229264d4fbd8449bbf2db1 *man/peakEnrichment4Features.Rd
11b477715b117033147f88e14b384fed *man/plotBaits.Rd
327b2637f8801d427d5bcbe789d16d1b *man/plotDistFun.Rd
16a5d4f0c957d986635904d0f0bfa084 *man/readAndMerge.Rd
1add4a5947bf826f2e26f20077b59594 *man/readSample.Rd
16a9d726a18d68a3935ef210e763eed6 *man/setExperiment.Rd
4a714a498417723b2d7d69a614786331 *session.txt
54193e030149235175e5a75968b0a95b *tests/testthat.R
31950f491084a2c81b95c8a03a4bc0ec *tests/testthat/Rplots.pdf
183acb2dcbd9b3c3625ec318bdb5c7a2 *tests/testthat/testRecalculateColumns.R
7495cb2fe5980ca0ff8112c021f11ee4 *tests/testthat/testRunFunctionsTwice.R
f44d1a4dbf185eb3e903c4ffc53c6b81 *tests/testthat/testWeights.R
5caadbf77b79d27c8ee9b62d4b1cd85c *vignettes/Chicago.Rmd
1eecda160fe3fc22e2d6ddf7fd4aa461 *vignettes/Chicago.bib
