a9b36c02fa0e6cadba410cbb9b12e363 *DESCRIPTION
f087a8b62f7bd44c5d6f4657413dd52b *NAMESPACE
9253d4f15db4371a41f78208822a868d *NEWS
b8f820ccfc2eb93747b3f085f007a8e2 *R/CeTF-class.R
98308b7be19a1c73258b771d8f7793dc *R/CeTFdemo-data.R
3260d5ee4ce94efc43d905a15e63e9ff *R/CircosTargets.R
cc877d2effcb8ee054a2f9c8fa43973d *R/PCIT.R
83eba36212f48a6a69629a4870de8d8c *R/RIF.R
6f9b9459270c245ffadcfaba06215131 *R/RIFPlot.R
ecd405972a44779f3c9fdb8d375325f0 *R/RIF_input-data.R
14d86db1e9fa13013de16a4ec80ca535 *R/RcppExports.R
90f02130fa9b1bd8597f9adbeda2c169 *R/SmearPlot.R
7a5a3f37d31ff165d78fef7992143203 *R/TFs-data.R
e2b7fcfe0a60b4c315e7368dc04224b4 *R/bivar_awk.R
c078526a3e0837400882284eee634e87 *R/clustCoef.R
f8b507854f3001c628237c4f021bbd6c *R/clustCoefPercentage.R
8f643be0cd1ddf92b0c5b6dab80003cf *R/densityPlot.R
e98d24867141f686d54888cd2d7ad546 *R/diffusion.R
90b1cdab961e100d7b3858d61a3ff8d8 *R/enrichPlot.R
ba46de11aa19724db61b982bcc4d3bfa *R/enrichdemo-data.R
2af246b6eb96050cea7ae9a433f11cff *R/expDiff.R
7cefc33fd00facb894aaf0da49311105 *R/getEnrich.R
36ec0adfcaddb628239c77e7d145f510 *R/getGroupGO.R
4bca644e5dd938dfa796f40ebd66b1d9 *R/globals.R
862149791527cac8d2b7b9981bdb32fd *R/gtfToBed.R
e95d7066e16cf82b4ae3110d9f57c4c2 *R/heatPlot.R
79921e30198a30441fad0be63ae9bbdf *R/histPlot.R
40edd586b5665bc17f85863abdc2c918 *R/netConditionsPlot.R
d5dc8a42ad58a69b514f6c4c2564e0aa *R/netGOTFPlot.R
a711332ca82901b87eed7f6105ecc770 *R/normExp.R
f8f4ee51a2bcac59f17f2279720100ab *R/refGenes-data.R
d8657a1ce32911f706aea90ca54e1422 *R/runAnalysis.R
1de3477d9f7740c68b334ee6982f371b *R/simCounts-data.R
748b58e51f7a65673a5bea7be4384f04 *R/simNorm-data.R
d215f199a4a79746930fe439b7cdeeec *R/zzz.R
cc46d8fa46d7963f685296410bd1bf16 *README.md
d178df8a46be3ea7f599296e24430ce0 *_config.yml
a705ec84cb39c8bbf28a15c46a89cfde *build/vignette.rds
b8fe9ae912bc1db7fb45c29f8ef5afed *data/CeTFdemo.RData
dc848632da9e81bd02da8f2082b9775d *data/RIF_input.RData
b06ffefe8cb2c84548a357d3573b1381 *data/TFs.RData
7333a4d4182b5660c8d70d6f69881fdb *data/enrichdemo.RData
20d5af3d3905d26baf89407d9260ea6f *data/refGenes.RData
f4b973bf1039f180f662db7878217fcb *data/simCounts.RData
14dd6df89080388e0ad573d12f54559f *data/simNorm.RData
a6cf4756352b2a8fda29da6df18d9e88 *inst/CITATION
5d85ced86d1d3afc30f76b8061b10338 *inst/doc/CeTF.R
bae79f4c33825fe291c200975427b282 *inst/doc/CeTF.Rmd
7335a418f204772e4a9d225324a12a44 *inst/doc/CeTF.html
b84e06a66fc47b6caf1c1486798e080e *man/CeTF-class.Rd
b67320269a542bb39fcd346b1be49134 *man/CeTFdemo.Rd
f329dfc3ea79649278552b467f956cc4 *man/CircosTargets.Rd
fcdc740db3670af858e757434baf4b66 *man/InputData-methods.Rd
6d03d06f2f59c5230e4ba4cd25b34cde *man/NetworkData-methods.Rd
7c5aae642fc39819e24e5e440a060ede *man/OutputData-methods.Rd
8511944af400dbec07994d178cad6631 *man/PCIT.Rd
a31ce72be99daa874e8c63d586583c44 *man/RIF.Rd
acc57c5fabe45950f5657e0587aa8d9e *man/RIFPlot.Rd
a583a0960a8dd812891a51b7b6be12df *man/RIF_input.Rd
6da6f9dfd53a88471208671babb69038 *man/SmearPlot.Rd
2d91fbf6aa6ba39759db8c4cf0f52408 *man/TFs.Rd
25eb879689bffeb27c63f41b1c97651a *man/bivar.awk.Rd
b102fae966e3802c0f27ac5a2f9643f2 *man/clustCoef.Rd
58a275ed44a8a2bf0cfb2dd44f6febe4 *man/clustCoefPercentage.Rd
98742bd5ab6ace8389f64e775ac894bf *man/densityPlot.Rd
27cb021c36c27b8eb27b2563548b8b2c *man/diffusion.Rd
67de2e260e9e65f0227af8cb637316b5 *man/enrichPlot.Rd
550a49b2d7bd0ffaf851a5a34c9f8eb7 *man/enrichdemo.Rd
de883be9401c6c327f476bd5374bd8a8 *man/expDiff.Rd
fdfd70fb4a6fbeca11ec64a018fcd006 *man/getDE-methods.Rd
76f7b431607fba1cc0f7653ef3e730e0 *man/getData-methods.Rd
f358d9517a3f666f5dd5a75f0f358edc *man/getEnrich.Rd
3f3099a010e3624d6046072e42b8738e *man/getGroupGO.Rd
8e1d4a7a84bc89c0f0883b0efb6593eb *man/gtfToBed.Rd
8676f54f5205f562aabeca0ab978e0b3 *man/heatPlot.Rd
3f53a5fe503f1be4f2eea8f09a6e6ee4 *man/histPlot.Rd
66cdf4fbe43bd19658eba6da107b91ae *man/netConditionsPlot.Rd
f72777fc43cd4cab3f74061b93804635 *man/netGOTFPlot.Rd
7331260618b8602ee3abef147a1b4196 *man/normExp.Rd
139cf2453e112a5d38b113b7bffdb90b *man/pcitC.Rd
831c581bde5acc6a70fa6aecf7d19114 *man/refGenes.Rd
4541c869be137bff9a01b41073bf88c9 *man/runAnalysis.Rd
f04103c4593b053e04b156caca0f7b22 *man/simCounts.Rd
7641b5306f1918e4862c625ce35dd930 *man/simNorm.Rd
28fe5ffe86d88fc850df4af131d1a206 *man/tolerance.Rd
f6946a8e8ae06f57aced5404b0a9025f *src/PCIT.cpp
77497caa7ef76f20673a4dd1c83f83b4 *src/RcppExports.cpp
20b8ffec2e7b07c4171eff301e01ea00 *tests/testthat.R
6411c0ee2b513b342800d817ba9d9cdd *tests/testthat/test_PCIT.R
d07a207a66732087c15c5b1a6273a142 *tests/testthat/test_RIF.R
d37b1ae4abb7723bc9669e642915025d *tests/testthat/test_RIFPlot.R
89ea2c21738cf63bd89810ba844dba3b *tests/testthat/test_SmearPlot.R
e00fb07db30e2d6d2ebdded3abb8de0d *tests/testthat/test_bivar_awk.R
bd8a67aa1f748758c53fedf5824d4fa4 *tests/testthat/test_clustCoef.R
bb9079597f56c97f9a0185ba4d4979fd *tests/testthat/test_clustCoefPercentage.R
e03f9dfa9c4608fa9a32fd32b0d5a123 *tests/testthat/test_densityPlot.R
536064272570a576163081f5d0814a3d *tests/testthat/test_enrichPlot.R
a51613114a9af9223126ee23d7d10f06 *tests/testthat/test_expDiff.R
081f6b4bbf64ca64e52e36a77cb57291 *tests/testthat/test_getEnrich.R
ecfcf04a707f8e0e0cdbb8020436bc4a *tests/testthat/test_getGroupGO.R
49456c0785ba2df05d369a0ca29db831 *tests/testthat/test_heatPlot.R
acacc315b83a18d15b2753a62ba4347a *tests/testthat/test_histPlot.R
bfe950a9ed50d762c009033affd8c174 *tests/testthat/test_netConditionsPlot.R
5f7d8d669971c267a2ab4855184769c7 *tests/testthat/test_netGOTFPlot.R
63dcce122e3cbc07bb99c9c9f69fde8a *tests/testthat/test_normExp.R
aa0925f5233188319f55bfeccded5e4e *tests/testthat/test_runAnalysis.R
3025c778c2df63b916d04d7057d61200 *tests/testthat/test_tolerance.R
bae79f4c33825fe291c200975427b282 *vignettes/CeTF.Rmd
516a1d9bae3885dc7068c62d65b72b86 *vignettes/fig1.jpg
c6fadbc1d1b065f25499b3071ba23466 *vignettes/fig2.png
5a189dad91e061e73018076e3108acae *vignettes/library.bib
d21aa5ca8934e744959b508927028ce4 *vignettes/logo.png
