# Generated by roxygen2: do not edit by hand

export(filterCNVs)
export(loadCNVcalls)
export(loadSNPsFromVCF)
export(loadVCFs)
export(plotAllCNVs)
export(plotScoringModel)
export(plotVariantsForCNV)
import(VariantAnnotation)
import(assertthat)
import(karyoploteR)
importFrom(Biostrings,head)
importFrom(Biostrings,width)
importFrom(CopyNumberPlots,plotCopyNumberCalls)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,width)
importFrom(IRanges,IRanges)
importFrom(IRanges,reduce)
importFrom(IRanges,subsetByOverlaps)
importFrom(Rsamtools,TabixFile)
importFrom(Rsamtools,bgzip)
importFrom(Rsamtools,headerTabix)
importFrom(Rsamtools,indexTabix)
importFrom(SummarizedExperiment,rowRanges)
importFrom(graphics,abline)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(karyoploteR,plotKaryotype)
importFrom(methods,is)
importFrom(pracma,sigmoid)
importFrom(regioneR,filterChromosomes)
importFrom(regioneR,toGRanges)
importFrom(utils,read.csv)
importFrom(utils,str)
