0d5713b88d8e03a05207857ae798d5da *DESCRIPTION
7a39adfa892b9de320b033a85ced1927 *LICENSE
b99e5205e96e064efee11e724a47bd75 *NAMESPACE
58b24dccbeddcb40f41c92d5c3df519f *NEWS
d028ba7e7946bd713a36653895f18db9 *R/Modified_Wald_Test_Sandwich_v3.R
99fa55c93e8ab393e8efaf69d071bd85 *R/R_Pdg.xs.strat.dom.r
550beb335631906515a966b599d995f1 *R/R_Pdg.xs.strat.dom.trend.R
24f3a5b373ff320b0ca4abc79c814882 *R/R_RERI.AP.S.r
1a5ab9ab7c27874b3922c5547935413c *R/R_RERI.AP.S.small.r
7b71e535ecf14f8bfb749dc7442db03b *R/R_RERI.AP.S_retro.r
34ad1ddafb2dccb6957c19cd2fd09c1c *R/R_additiveTest.r
1a3a7385c7ac68dd16d11bea4a3e6843 *R/R_additiveTest.small.r
9a88415d5f429a3ed98486a1a4761d63 *R/R_getLogLike.mat.r
e0262490cbe199dabb1eec303baded0b *R/R_getRR.general.r
79824f72f453ebd23e9aac1be1add201 *R/R_getZ.datX.general.r
013b64206d41a64383f8be3503f76154 *R/R_getZ.dom.r
fa62bd6fe0620e7ddfe63f0198d3b857 *R/R_getZ.general.r
3543bdde62848b67356d2e0d70d325a1 *R/R_logLikBinom.add.reparam.general.r
4b07f6c5cc2480666a91eb5b2ce3d3e3 *R/R_logLikBinom.add.reparam.general.trend.R
2f58e6df2761f70f2daa07c1cd07354b *R/R_logLikBinom.indep.add.reparam3.general.r
f685262c9f3c66ea4a9accd301089a89 *R/R_logLikBinom.indep.add.reparam3.general.trend.R
035e4f3b2341d6288523e59a62a36959 *R/R_logLikBinom.indep.r
b0d0b36babccec369e703e36ffb8d20e *R/R_logit.r
03b96b860aba1423a31bb4f022ca604b *R/R_makeBetaTable.general.r
d8417b73f0bfba270cb3c2700afb52de *R/R_match.order.r
1baa62c8cc33e9f50c1114ca36e5e951 *R/R_multiGrep.r
cddb52c589aa2bff3e449e63e323425a *R/R_myConvertLevel.r
7ba3386794e4d7409eea8dcab0555470 *R/R_myDummyVar.r
46b50e9032775300881319831c947ced *R/R_myDummyVar3.r
56e6067dba5a0b284bd5cccdc4beef63 *R/R_myInteractMatrix2.r
be1e47afe6e6410066259a8bc9126a5b *R/R_myOR.CI3.r
cec109c49f2bdbec7b743ba425987044 *R/R_mySnp.logistic2.r
185581314ca0558b08973e058a028854 *R/R_ro.th.small4.indep2.r
04f50a2462995fbcbe60ce869998bcd3 *R/R_scoreTest.general9.r
06d0262797987f0a92891c33e5d9cf67 *R/R_scoreTest.small.logit5.max.indep6.r
5f9d690c22104371e60aa77e4bcbee40 *R/R_scoreTest.small.logit5.max.r
08fdc372a8807e246edb3bbabdf702c8 *R/R_strCombine2.r
14ab4f18a4c8c6b4600a3c8de2375341 *R/R_variablePrep2.r
34526e3c877c330c07837afcb2c104af *R/additive.test.R
f3eb824a2d307be48d2245880bc14918 *R/getMatchedSets.R
a85d90d36d6ea831f921246626069be0 *R/score.test.R
1ac7bf116f9ba6dc0b19c17616f829e0 *R/snp_matched.R
5f38c25995751d6df226237d03f9e1b1 *R/source.SCORE.functions.R
bebdb437f27fed2aa38d5ecaf3feac76 *R/wga.R
4fea858a40e5dfa56a204269b84f383c *R/wga_GbyE.R
4e77d8b6e62f22e367b67dbb95075cca *R/wga_GbyE_print.R
86205b7a4513161c690b27d03eaa4f69 *R/wga_glu.R
8457c478c2fa4beb8f07c9d36b9454ab *R/wga_impute.R
d7e0a5c62907973a98e6301d1b7364e5 *R/wga_plot.R
270309cc01485203afca48fbf572f68d *R/wga_read.R
e1b9e647c7d8c6d00f1a4f34d591f4f2 *R/wga_stat.R
ea156b994e549971edc2e91192b3538b *R/wga_stream.GxE.R
44fe7797391d40252eaaaa8b5a10c87e *R/wga_stream.R
71243addee8bfd634b0640ccc9096b72 *R/wga_util.R
87d81c7d937030075d51012912b4f729 *build/vignette.rds
f688dde843b12021dbbeee361edfea93 *data/LocusMapData.txt
aa1b102c841fd273ce711a6940eef3a9 *data/Xdata.txt
f1ef641fe1bb91fddcd29c9a70aef6ee *data/Xdata2.txt
2cfc28a760d95afafc94622379715321 *inst/doc/vignette.R
b3526ea8d042d1d7dd0d10d735b86e87 *inst/doc/vignette.Rnw
c70bcc01f8854383cce1810eeb3e4580 *inst/doc/vignette.pdf
f953993288069f2f473039e803d65545 *inst/doc/vignette_GxE.R
e6b83d88b7c19df1e546bc4f85282421 *inst/doc/vignette_GxE.Rnw
9b28d3f4b1326c775448c7ba1450fe71 *inst/doc/vignette_GxE.pdf
f688dde843b12021dbbeee361edfea93 *inst/sampleData/LocusMapData.txt
bd021bb26bbefa3bf469cc5806a96762 *inst/sampleData/SNPdata.rda
aa1b102c841fd273ce711a6940eef3a9 *inst/sampleData/Xdata.txt
913a02669d251d9ee5bbe31aa9526a18 *inst/sampleData/geno_data.ldat.gz
53a6c39b20276b881f999a74bec585bc *inst/sampleData/geno_data.tfam
5bdef69b25f60b048fb09ea06073cff2 *inst/sampleData/geno_data.tped.gz
5b282e8d89e1af54c01dba7214633465 *inst/sampleData/geno_imputed.txt.gz
294000c0f20fd12979a8c582c6690273 *inst/sampleData/pheno.txt
78c296f0dc3ba010b048965aabc30e28 *inst/sampleData/subjects_imputed.txt
f8e4a594ce96133ec7247853cfdb2e38 *man/CGEN.Rd
23a9538d3bd8e2e2e9bb834c70e9e56d *man/GxE.scan.Rd
7f6c58a9e9ee4dec1a03cb3411eb4ffa *man/GxE.scan.combine.Rd
d8f7a21ca8bd04cee380718921343e6e *man/GxE.scan.partition.Rd
bb22fd2b14438b5c2dc0c3af8af4986b *man/LocusMapData.Rd
5dcdb5306de21aba8e69728f99ac45ee *man/QQ.plot.Rd
d0b5b28ff39ece3dae0c1fc9cf102cce *man/Xdata.Rd
f4b67aa2133528efda2fb7e3e975f7ff *man/Xdata2.Rd
6e30a359577fc2e47cfb4a2ade0c9c4b *man/additive.test.Rd
630a872dec38571bc0ac93372ed3d7e1 *man/chromosome.plot.Rd
9d270d72c90aa8fd876a6e884d3565ee *man/getMatchedSets.Rd
a11c628c35f90fb51074cde57ab630bc *man/getSummary.Rd
7d353b8506e2bed45e7eb85e62f34992 *man/getWaldTest.Rd
a308f5d27449ebfdb085af2c7d3ece41 *man/locusMap.list.Rd
64020e04435fcb86e465fb67b3e1a8c8 *man/pheno.list.Rd
b4783486fccd71c41cd17ecfb67f315d *man/printEffects.Rd
25ba090370cbb5dba7c2cb80dc1b5edf *man/snp.effects.Rd
a01e294e312d6f035d95f928dbb5479a *man/snp.effects.plot.Rd
b8df8559881cedeec32959edc7b13130 *man/snp.list.Rd
953a1a17102f4d879ead3ce899835e24 *man/snp.logistic.Rd
e7ed50ce22b2984319eacdfc573c953e *man/snp.matched.Rd
cc16961f5c583826461552eb7fe76db7 *man/snp.score.Rd
a00c969114a95d42165f5ea7180dddbf *man/subject.list.Rd
b6295e2d6b8e9bc598f0f3aa0a68de3a *src/Additive.c
d6b1ed6a734754064b6a87123588be1a *src/CML.c
c137e0ec9a9bf902f3d4dbc7da0b1669 *src/ccl.c
3520cfcca7a8c48b48e68286acccb3f0 *src/csclust.f
fea224b4133990eabcb2322c2fbef0b4 *src/fsclust.c
6f55ba7ae2f81815f0c216bfc7926967 *src/hcl.c
0b5256c22c1191d7518374913fb22217 *src/pmatch.c
f7df542c7fe1e3bdd369fecffdb18679 *src/score.c
b3526ea8d042d1d7dd0d10d735b86e87 *vignettes/vignette.Rnw
e6b83d88b7c19df1e546bc4f85282421 *vignettes/vignette_GxE.Rnw
