ab030404f3a12df5975f4ad981ae65ab *DESCRIPTION
d15c2812fcf22d2c469d55c9e610f0b5 *LICENSE
5026822b8543199907ee800258644e15 *NAMESPACE
717898aba1683d153026478cc66b918b *NEWS.md
abe39b2331c808be33c36e691b25c196 *R/BayesSpace.R
370c5aa42afbd57a308cc10494475093 *R/RcppExports.R
b86f994161a9b2aaf9f9cd46d92f01b3 *R/enhanceFeatures.R
584a3d131f7cacb2dd4ccbbd275729f5 *R/mcmcChain.R
5f436930529a80ba81220a64a4b46612 *R/parallelize.R
abd77c5b69e1a9715553d27508b0b2e3 *R/qTune.R
108a2406326881338b6dd6ac197177c3 *R/readVisium.R
31bd98bb6b3061b3d29b75c4b7899964 *R/spatialCluster.R
9796c03f739553888fd0050356589c4e *R/spatialEnhance.R
22f784faf3523375063119a6b02be125 *R/spatialPlot.R
d9110ec0cde52f1102e802f888d2dfeb *R/spatialPreprocess.R
8eb82b742a1ceec7cff763a45c6fa94e *R/utils.R
0afe78fafa76d4d4954d7d388f592fa8 *README.md
571746b76e02d35bada6d2ec5848bf1f *build/vignette.rds
6325c949bf607030063fc4e173c3c49b *configure
8e5967bcae683a8cfedbccd1da917ee0 *configure.win
65c4d3dbe93d42f7e41b294653142242 *inst/CITATION
637104fa068c9d94ad4986ac4617f456 *inst/doc/BayesSpace.R
8f22abd4986254ddc4366f83433ca957 *inst/doc/BayesSpace.Rmd
f96e8fc94b487b9d0805318373a6a729 *inst/doc/BayesSpace.html
38cafd95feea38de5d28c1f5c4c3e114 *inst/extdata/2018_thrane_melanoma/ST_mel1_rep2.Giotto_HMRF.csv
6f72335fddfd38779120e9c6d9aace2b *inst/extdata/2018_thrane_melanoma/ST_mel1_rep2.rds
4547a78f53c048ac5cd424bc62085c62 *inst/extdata/2020_maynard_prefrontal-cortex/151673.Giotto_HMRF.csv
5f175a851bbe90a05a360f016a84f69e *inst/extdata/2020_maynard_prefrontal-cortex/151673.stLearn_HVGs.csv
52ab1aff6ca663b325f55536ea58c0a4 *inst/extdata/2020_maynard_prefrontal-cortex/151673.stLearn_markers.csv
97098ad96232b8b06f1a6c47ed95ebfe *inst/extdata/README.md
f0939639d2d3edf007d3bdb73fe8f72b *inst/logo/BayesSpace_logo_alt.png
cc3b87ea80afad6867389a0ac1e57ac6 *inst/logo/hex_sticker.Rmd
f2877964c2fddaa917187c591d7c4f6c *inst/logo/logo.png
9ba0b77c012ed1068525ad8881fb1791 *inst/testdata/maynard_151673_subset.PCs.csv.gz
0bacc49dfa8039f9f2e3071963632e03 *inst/testdata/maynard_151673_subset.colData.csv.gz
ec8a39b42fad0dad4e9cfc032fa6212c *inst/testdata/maynard_151673_subset.enhance_truth.csv.gz
57070dcee812c5e3dc637e39d88da59c *inst/testdata/maynard_151673_subset.metadata.rds
e93fa6c420d6d4b105fef4825797ef93 *man/BayesSpace.Rd
a5318bedaeffa57173943be641b13a10 *man/Mode.Rd
718df13705c7b64f727e15386ff66eff *man/cluster.Rd
6d6457efda23a8693159b6d4e5030bda *man/clusterPlot.Rd
e6c0b906b42fbbb3e7948ffb6bd4a9b9 *man/deconvolve.Rd
8926a7c5131bc595ddb120b433353b22 *man/dot-adjust_hex_centers.Rd
7ee84150bea9c935a9efdb9dda78a1d1 *man/dot-bsData.Rd
c44e3054ce537b18e1e7029fe868d650 *man/dot-clean_chain.Rd
5b700d763e445fced0d2bfc43485950d *man/dot-compute_interspot_distances.Rd
00d7816c7b3c707a5d2e1bf4595cc6be *man/dot-extract_indices.Rd
4f1f0b268da4989754015cb0c36ecef1 *man/dot-find_neighbors.Rd
a0813ef0c533ebad8aa28dff001d5b06 *man/dot-flatten_matrix_list.Rd
b349c5ce82400f4f3837d5b2b726063a *man/dot-flip_axis.Rd
6d89cf74ab837b49be6e84fb79965717 *man/dot-infer_param_dims.Rd
4922c126da959aebbd1f5cf4653ae6c8 *man/dot-init_cluster.Rd
82535f51b89bdeaf09a480443c7af79d *man/dot-list2vec.Rd
52d5e7f0077b6c229fca757c34db65fc *man/dot-make_hex_spots.Rd
c10810740ab62ca02496633ef57f1101 *man/dot-make_index_names.Rd
37055096c0e37bb92a40a124e09e440f *man/dot-make_spot_vertices.Rd
ae982a655b98a85156f8a29b79d92535 *man/dot-make_square_spots.Rd
315719c7ccb3744fa8648e1173461e2a *man/dot-make_subspot_coldata.Rd
4a4221a412a7445eb8793eab34315d8b *man/dot-make_subspots.Rd
d92b0ca77041af39130542c1b08f9935 *man/dot-make_triangle_subspots.Rd
1569c354677b631f768753914be3ccd5 *man/dot-make_vertices.Rd
82528c11323a87fb431e2280a2380a8f *man/dot-prepare_inputs.Rd
72fbce3763e0c3690a3b3f863f2ffa34 *man/dot-read_chain.Rd
5e9c1e9389855b7c8e926c9691a476ec *man/dot-read_spot_pos.Rd
e605b73dca1b7f760b4833898066de10 *man/dot-select_spot_positions.Rd
401dd8c67dc07cc2eddecd691adf9787 *man/dot-select_subspot_positions.Rd
91715453a6611031afff622cc5d5b5b7 *man/enhanceFeatures.Rd
fad07a1746f6737137316ad6e64341f4 *man/exampleSCE.Rd
7d2e8f60f9d2a35e7b5f0d5d4f1b2118 *man/featurePlot.Rd
4a16d07d8654a2078866a40cc2b1ba6a *man/find_neighbors.Rd
6c024b334d1667fb34dd5adc52b9f548 *man/getRDS.Rd
4bf8266be576eaad833ba982b57168f5 *man/mcmcChain.Rd
c2671d21a91ec29243457ba0d9c48ad7 *man/parallelize.Rd
0c6e38119c5eb4996c0b180f473e4188 *man/qTune.Rd
a964f02efc4c9488b0e331e5ba7edf27 *man/readVisium.Rd
dd0cf16d411801db879b033af3ca325c *man/spatialCluster.Rd
ae98f9e374f4b7e6c943d38b234c3644 *man/spatialEnhance.Rd
fb35aee5099f581ecb65c44bbc82b70b *man/spatialPlot.Rd
8b634deab15cabef2c3eadcdbfc46b20 *man/spatialPreprocess.Rd
dc4e01b3a6ff2d2e712ae5c7fd5da910 *src/Makevars
dc4e01b3a6ff2d2e712ae5c7fd5da910 *src/Makevars.win
2925e100387fe72bfda13adaa65471f4 *src/RcppExports.cpp
7fe3cc5def40d291d0d773fc652253bb *src/cluster.cpp
59f5326b47739a4917a956c4a87c1e22 *src/compare_enhanced.cpp
fe04b2b03a515bba9f509e3b853ee89a *src/double_states_vector.h
4fc88994652c26843c076ad28ae9b85a *src/neighbor.h
8762e55a94381ece721b51d9eb3ebc3d *src/utils.h
14e0c47780633f2cf6b1341a82d20e5d *tests/testthat.R
4f4c22d298cb0288e056a8ff56b67c19 *tests/testthat/test-enhanceFeatures.R
f5706eb52b051aaeee7665e36c711e36 *tests/testthat/test-find_neighbors.R
807653a08ee2c4a081f64367260c4a0f *tests/testthat/test-mcmcChain.R
8f22abd4986254ddc4366f83433ca957 *vignettes/BayesSpace.Rmd
