Changes in version 1.22.0                        

Breaking changes

  - Adds experiment parameter to different glm* functions.
  - Changing in hashing function to use rlang::hash that reduces a
    dependency.
  - Deprecates hallmarks function as API has been shutdown.

Miscellaneous

  - Use of native pipe instead of {magritrr}'s %>%
  - Corrects styling and linter issues for better code quality and
    readability
  - Starts to deprecates parameters using dot.case in favor of
    camelCase.
  - Increases code coverage to 95%.

                       Changes in version 1.14.3                        

  - Corrects bug when calculating the penalty.factor from a matrix (as
    it was not applying the transformation function)

                       Changes in version 1.14.2                        

  - Corrects all CRAN deprecations (includes code from {loose.rock} in
    this package)

                       Changes in version 1.11.0                        

  - {sparsebn} has been disabled pending upstream corrections (examples
    from that package failed to pass)

                        Changes in version 1.2.0                        

  - Depends on more recent version of {loose.rock} (previous was
    deprecated)
  - Release of new Bioconductor 3.9

                        Changes in version 1.1.0                        

  - Official release of glmSparseNet in Bioconductor

                       Changes in version 0.99.17                       

  - Converts to 4 space indentation

                       Changes in version 0.99.15                       

  - Speeds up ppi vignette

                       Changes in version 0.99.14                       

  - Renamed functions to camelCase
  - Renamed non-exported functions with '.' prefix
  - Removed most methods, as suggested by Bioc reviewer
  - Removed commented code
  - Changed functions that handle tcga data to use TCGAutils package
  - Many more described in
    https://github.com/Bioconductor/Contributions/issues/849#issuecomment-422594871

                       Changes in version 0.99.13                       

  - Renamed draw.kaplan to separate2groups.cox

                       Changes in version 0.99.9                        

  - Removed loose.rock functions from this package as they are published
    in CRAN