CHANGES IN VERSION 1.6.0 (2025-04-14)
-------------------------------------

USER VISIBLE CHANGES

    o Handling of metadata from non-model organisms has been improved. Thanks to discussions on the support site (https://support.bioconductor.org/p/9160897/) and GitHub (https://github.com/rcastelo/gDNAx/issues/5).

    o Added more documentation to the output of the 'getDx()' method.

CHANGES IN VERSION 1.2.0 (2024-04-27)
-------------------------------------

USER VISIBLE CHANGES

    o Prompt an error when a 0-byte BAM file is passed as an argument.

    o Added a new filtering strategy based on stranded genomic windows that can be used when input RNA-seq data is stranded.

    o gDNAx objects store now also strandedness estimated values.

    o identifyStrandMode() has been deprecated in favor of strandedness().

    o gDNAdx() can now automatically guess library layout and protocol.

    o Added a new function gDNAtx() that performs filtering with the most common default strategy.

BUG FIXES

    o Bug fix in the show method for gDNAx objects.

    o Bug fix when the genome() getter on GAlignment* objects is not NA.

CHANGES IN VERSION 0.99.6 (2023-05-26)
--------------------------------------

USER VISIBLE CHANGES

    o Submission of the first version to the Bioconductor project.