| Depends On Me |
alabaster.ranges, AllelicImbalance, AneuFinder, annmap, AnnotationHubData, BaalChIP, Basic4Cseq, betaHMM, BindingSiteFinder, biomvRCNS, BiSeq, bnbc, BPRMeth, breakpointR, BSgenome, bsseq, BubbleTree, bumphunter, CAFE, CAGEfightR, casper, chimeraviz, ChIPpeakAnno, ChIPQC, chipseq, chromPlot, chromstaR, CINdex, cn.mops, cnvGSA, CNVPanelizer, CNVRanger, COCOA, Cogito, compEpiTools, consensusSeekeR, CSAR, csaw, CSSQ, deepSNV, DEScan2, DESeq2, DEXSeq, DiffBind, diffHic, DMCFB, DMCHMM, DMRcaller, DNAshapeR, easylift, EnrichedHeatmap, ensembldb, epigenomix, esATAC, ExCluster, extraChIPs, fastseg, fCCAC, FindIT2, GeneBreak, GenomicAlignments, GenomicDistributions, GenomicFeatures, GenomicFiles, GenomicOZone, GenomicPlot, GenomicScores, GenomicTuples, gmapR, gmoviz, GOTHiC, GreyListChIP, groHMM, gtrellis, GUIDEseq, Guitar, Gviz, HelloRanges, HERON, hiAnnotator, HiCDOC, HiTC, IdeoViz, igvR, igvShiny, InTAD, intansv, InteractionSet, IntEREst, IWTomics, karyoploteR, m6Aboost, maser, MBASED, Melissa, metagene2, methimpute, methylKit, methylPipe, minfi, MotifDb, motifTestR, msgbsR, MutationalPatterns, NADfinder, oncoscanR, ORFik, periodicDNA, plyranges, podkat, QuasR, r3Cseq, RaggedExperiment, ramr, recoup, regioneR, RepViz, rGREAT, riboSeqR, ribosomeProfilingQC, RJMCMCNucleosomes, RNAmodR, RnBeads, Rsamtools, RSVSim, rtracklayer, SARC, Scale4C, SCOPE, segmentSeq, seqCAT, SeqGate, SGSeq, SICtools, SigFuge, SMITE, SNPhood, SomaticSignatures, spiky, StructuralVariantAnnotation, SummarizedExperiment, svaNUMT, svaRetro, tadar, TnT, trackViewer, transmogR, traseR, tRNA, tRNAdbImport, tRNAscanImport, txdbmaker, VanillaICE, VarCon, VariantAnnotation, VariantTools, VplotR, vtpnet, vulcan, wavClusteR, YAPSA, EuPathDB, excluderanges, ChAMPdata, EatonEtAlChIPseq, nullrangesData, RnBeads.hg19, RnBeads.hg38, RnBeads.mm10, RnBeads.mm9, RnBeads.rn5, WGSmapp, liftOver, sequencing, PlasmaMutationDetector, PlasmaMutationDetector2, rnaCrosslinkOO, RTIGER |
| Imports Me |
ACE, alabaster.se, ALDEx2, amplican, AnnotationFilter, annotatr, APAlyzer, apeglm, appreci8R, ASpli, AssessORF, ATACseqQC, ATACseqTFEA, atena, BadRegionFinder, ballgown, bambu, bamsignals, baySeq, BBCAnalyzer, beadarray, BEAT, BiFET, BioTIP, biovizBase, biscuiteer, BiSeq, BOBaFIT, borealis, branchpointer, BREW3R.r, BSgenomeForge, BUSpaRse, cageminer, CAGEr, cardelino, cBioPortalData, CexoR, cfdnakit, cfDNAPro, cfTools, chipenrich, ChIPexoQual, ChIPseeker, chipseq, ChIPseqR, chromDraw, ChromHeatMap, ChromSCape, chromVAR, cicero, circRNAprofiler, cleanUpdTSeq, CleanUpRNAseq, cliProfiler, CNEr, CNVfilteR, CNViz, CNVMetrics, comapr, coMethDMR, conumee, CopyNumberPlots, CoverageView, crisprBase, crisprBowtie, crisprDesign, CRISPRseek, CrispRVariants, crisprViz, CTexploreR, customProDB, DAMEfinder, Damsel, debrowser, decompTumor2Sig, deconvR, DEFormats, DegCre, DegNorm, deltaCaptureC, derfinder, derfinderPlot, DEWSeq, diffUTR, dinoR, DMRcate, dmrseq, DNAfusion, DominoEffect, doubletrouble, DRIMSeq, DropletUtils, DuplexDiscovereR, easyRNASeq, EDASeq, EDIRquery, eisaR, ELMER, enhancerHomologSearch, epialleleR, EpiCompare, epidecodeR, epigraHMM, EpiMix, epimutacions, epiregulon, epistack, EpiTxDb, epivizr, epivizrData, erma, EventPointer, factR, fcScan, FilterFFPE, fishpond, FLAMES, FRASER, GA4GHclient, gcapc, gDNAx, geneAttribution, GeneGeneInteR, GENESIS, genomation, GenomAutomorphism, genomeIntervals, GenomicAlignments, GenomicDataCommons, GenomicInteractionNodes, GenomicInteractions, GenVisR, geomeTriD, ggbio, gINTomics, GOfuncR, GrafGen, GRaNIE, gwascat, h5vc, heatmaps, hermes, HicAggR, HiCBricks, HiCcompare, HiCExperiment, HiContacts, HiCool, hicVennDiagram, HilbertCurve, HiLDA, hiReadsProcessor, hummingbird, icetea, ideal, idr2d, IMAS, iNETgrate, INSPEcT, ipdDb, IsoformSwitchAnalyzeR, isomiRs, IVAS, karyoploteR, katdetectr, knowYourCG, loci2path, LOLA, LoomExperiment, lumi, MADSEQ, magpie, mariner, mCSEA, MDTS, MEAL, MEDIPS, megadepth, memes, metaseqR2, methInheritSim, methrix, methylCC, methylInheritance, MethylSeekR, methylSig, methylumi, MinimumDistance, MIRA, missMethyl, mitoClone2, MMDiff2, mobileRNA, Modstrings, monaLisa, Moonlight2R, mosaics, Motif2Site, motifbreakR, motifmatchr, MouseFM, MSA2dist, MultiAssayExperiment, multicrispr, MultiDataSet, multiHiCcompare, MungeSumstats, musicatk, NanoMethViz, ncRNAtools, nearBynding, normr, nucleR, nullranges, OGRE, oligoClasses, OmaDB, openPrimeR, OrganismDbi, Organism.dplyr, OUTRIDER, OutSplice, packFinder, pageRank, panelcn.mops, partCNV, PAST, pcaExplorer, pepStat, pgxRpi, PhIPData, PICS, PING, PIPETS, plotgardener, plyinteractions, pqsfinder, pram, prebs, preciseTAD, primirTSS, proActiv, proBAMr, profileplyr, ProteoDisco, PureCN, Pviz, QDNAseq, qpgraph, qsea, Qtlizer, R3CPET, R453Plus1Toolbox, raer, RAIDS, RareVariantVis, RCAS, RcisTarget, recount, recount3, regionalpcs, regioneR, regionReport, regutools, REMP, Repitools, RESOLVE, rfPred, rGADEM, RgnTX, Rhisat2, RiboCrypt, RiboDiPA, RiboProfiling, Rmmquant, rnaEditr, RNAmodR.AlkAnilineSeq, RNAmodR.ML, RNAmodR.RiboMethSeq, roar, RTCGAToolbox, saseR, scanMiR, scanMiRApp, scDblFinder, scmeth, scoreInvHap, scPipe, scRNAseqApp, scruff, scuttle, segmenter, seq2pathway, SeqArray, seqPattern, seqsetvis, SeqSQC, SeqVarTools, sesame, sevenC, shinyepico, ShortRead, signeR, SigsPack, SimFFPE, SingleCellExperiment, sitadela, snapcount, soGGi, SparseSignatures, spatzie, SpectralTAD, SpliceWiz, SplicingGraphs, SPLINTER, strandCheckR, syntenet, systemPipeR, TAPseq, target, TCGAbiolinks, TCGAutils, TCseq, TDbasedUFE, TDbasedUFEadv, TENxIO, terraTCGAdata, TFARM, TFBSTools, TFEA.ChIP, TFHAZ, tidybulk, tidyCoverage, TitanCNA, tLOH, tracktables, transcriptR, transite, TRESS, tricycle, triplex, TVTB, txcutr, tximeta, Ularcirc, UMI4Cats, uncoverappLib, Uniquorn, UPDhmm, VariantFiltering, VaSP, VCFArray, wiggleplotr, xcore, XNAString, ZygosityPredictor, BioMartGOGeneSets, fitCons.UCSC.hg19, MafDb.1Kgenomes.phase1.GRCh38, MafDb.1Kgenomes.phase1.hs37d5, MafDb.1Kgenomes.phase3.GRCh38, MafDb.1Kgenomes.phase3.hs37d5, MafDb.ExAC.r1.0.GRCh38, MafDb.ExAC.r1.0.hs37d5, MafDb.ExAC.r1.0.nonTCGA.GRCh38, MafDb.ExAC.r1.0.nonTCGA.hs37d5, MafDb.gnomAD.r2.1.GRCh38, MafDb.gnomAD.r2.1.hs37d5, MafDb.gnomADex.r2.1.GRCh38, MafDb.gnomADex.r2.1.hs37d5, MafDb.TOPMed.freeze5.hg19, MafDb.TOPMed.freeze5.hg38, MafH5.gnomAD.v4.0.GRCh38, phastCons100way.UCSC.hg19, phastCons100way.UCSC.hg38, phastCons7way.UCSC.hg38, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh38, TENET.AnnotationHub, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, BioPlex, biscuiteerData, chipenrich.data, COSMIC.67, ELMER.data, fourDNData, GenomicDistributionsData, leeBamViews, mCSEAdata, MethylSeqData, pepDat, scMultiome, scRNAseq, sesameData, SomaticCancerAlterations, spatialLIBD, TumourMethData, VariantToolsData, ExpHunterSuite, recountWorkflow, seqpac, TCGAWorkflow, cinaR, crispRdesignR, driveR, geneHapR, geno2proteo, GenoPop, hahmmr, hoardeR, ICAMS, karyotapR, locuszoomr, lolliplot, LoopRig, MAAPER, MitoHEAR, MOCHA, noisyr, numbat, oncoPredict, PACVr, RapidoPGS, revert, scPloidy, Signac, simMP, VALERIE |
