ChIPprofile-class       The soggi function and ChIPprofile object.
Ops,ChIPprofile,ChIPprofile-method
                        Arithmetic operations
c,ChIPprofile-method    Join, subset and manipulate ChIPprofile objects
chipExampleBig          Example ChIPprofiles
findconsensusRegions    Plot coverage of points or regions.
groupByOverlaps         Create GRangeslist from all combinations of
                        GRanges
ik_Example              Example Ikaros peaksets
ik_Profiles             Example Ikaros signal over peaksets
normalise               Normalise ChIPprofiles
normaliseQuantiles      Normalise quantile
orientBy                Set strand by overlapping or nearest anchor
                        GRanges
plotRegion              Plot regions
pwmCov                  Example motif coverage
pwmToCoverage           PWM hits and motif scores as an RLElist
singleGRange            A single GRange
