DClsei                  Solve Least Squares with Equality and
                        Inequality Constraints (LSEI) problem
DCrr                    Perform robust regression
check_signature         Check the signature matrix
dataset_racle           An exemplary dataset with samples from four
                        patients with metastatic melanoma
eset_to_matrix          Convert a 'Biobase::ExpressionSet' to a
                        gene-expression matrix.
extract_ti_from_se      Extract tumor immune quantifications
fixMixture              Format the mixture matrix before deconvolution
get_densities           Scale deconvoluted cell fractions to cell
                        densities
makeQN                  Perform quantile normalization of expression
                        data
mapGenes                Rename gene symbols before deconvolution
quanTIseq               Run quanTIseq deconvolution
quantiplot              Plot the information on the tumor immune
                        contexture
quantiseq_helper        Helper functions for quanTIseq
quantiseqr-pkg          quantiseqr package
run_quantiseq           Run the quanTIseq algorithm
se_to_matrix            SummarizedExperiment to matrix
ti_quant_sim1700mixtures
                        quanTIseq output for the simulation data of
                        1700 mixtures for RNA-seq data
