INR                     The position count matrix for INR.
ProfileDist-class       ProfileDist
backgroundDist          Background distribution.
computeScoreDist        Compute exact position weight/count matrix
                        score distribution.
plotDist                Plot background and signal distributions.
regularizeMatrix        Careful regularization (pseudocount addition)
                        to a position count matrix.
scoreDistCutoffs        False discovery rate and power for PWM Score
                        distributions.
signalDist              Signal distribution.
