# Generated by roxygen2: do not edit by hand

export(decomposeVar)
export(loadContrastDatabase)
export(plotQueryResultsManh)
export(plotQueryResultsViolin)
export(queryWithContrasts)
export(testOrthosEnv)
importFrom(AnnotationHub,query)
importFrom(BiocParallel,bpisup)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpparam)
importFrom(BiocParallel,bpprogressbar)
importFrom(BiocParallel,bpstart)
importFrom(BiocParallel,bpstop)
importFrom(BiocParallel,bptasks)
importFrom(BiocParallel,bpworkers)
importFrom(DelayedArray,blockApply)
importFrom(DelayedArray,colAutoGrid)
importFrom(DelayedArray,read_block)
importFrom(ExperimentHub,ExperimentHub)
importFrom(HDF5Array,HDF5Array)
importFrom(HDF5Array,loadHDF5SummarizedExperiment)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,findMatches)
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(basilisk,BasiliskEnvironment)
importFrom(basilisk,basiliskRun)
importFrom(basilisk,basiliskStart)
importFrom(basilisk,basiliskStop)
importFrom(colorspace,darken)
importFrom(cowplot,plot_grid)
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,slice)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,geom_bin2d)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_jitter)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_continuous)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(ggpubr,clean_theme)
importFrom(ggpubr,ggdensity)
importFrom(ggpubr,rotate)
importFrom(ggrepel,geom_text_repel)
importFrom(ggsci,pal_jco)
importFrom(grDevices,colorRampPalette)
importFrom(grid,unit)
importFrom(keras,load_model_hdf5)
importFrom(methods,is)
importFrom(orthosData,GetorthosContrastDB)
importFrom(parallel,detectCores)
importFrom(plyr,desc)
importFrom(reticulate,import)
importFrom(rlang,.data)
importFrom(stats,cor)
importFrom(stats,na.omit)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(tidyr,pivot_longer)
