limpa-package	limpa-package
completeMomentsON	completeMomentsON
dpc	dpc
dpcCN	dpcCN
dpcDE	dpcDE
dpcImpute	dpcQuant
dpcImpute.default	dpcQuant
dpcImpute.EList	dpcQuant
dpcImputeHyperparam	dpcquantHyperparam
dpcQuant	dpcQuant
dpcQuant.default	dpcQuant
dpcQuant.EList	dpcQuant
dpcQuantHyperparam	dpcquantHyperparam
dztbinom	dtbinom
estimateDPCIntercept	estimateDPCIntercept
expTiltByColumns	imputeByExpTilt
expTiltByRows	imputeByExpTilt
filterCompoundProteins	filterCompoundProteins
filterCompoundProteins.default	filterCompoundProteins
filterCompoundProteins.EList	filterCompoundProteins
filterCompoundProteins.EListRaw	filterCompoundProteins
filterNonProteotypicPeptides	filterCompoundProteins
filterNonProteotypicPeptides.default	filterCompoundProteins
filterNonProteotypicPeptides.EList	filterCompoundProteins
filterNonProteotypicPeptides.EListRaw	filterCompoundProteins
filterSingletonPeptides	filterCompoundProteins
filterSingletonPeptides.default	filterCompoundProteins
filterSingletonPeptides.EList	filterCompoundProteins
filterSingletonPeptides.EListRaw	filterCompoundProteins
fitZTLogit	fitZTLogit
imputeByExpTilt	imputeByExpTilt
imputeByExpTilt.default	imputeByExpTilt
imputeByExpTilt.EList	imputeByExpTilt
imputeByExpTilt.EListRaw	imputeByExpTilt
limpa	limpa-package
observedMomentsCN	observedMomentsCN
peptides2ProteinBFGS	peptide2Protein
peptides2ProteinNewton	peptide2Protein
peptides2Proteins	peptide2Proteins
peptides2ProteinWithoutNAs	peptide2Protein
plotDPC	plotDPC
plotMDSUsingSEs	plotMDSUsingSEs
plotPeptides	plotPeptides
plotPeptides.default	plotPeptides
plotPeptides.EList	plotPeptides
plotProtein	plotProtein
proteinResVarFromCompletePeptideData	proteinResVarFromCompletePeptideData
pztbinom	dtbinom
readDIANN	readDIANN
readSpectronaut	readSpectronaut
removeNARows	removeNARows
removeNARows.default	removeNARows
removeNARows.EList	removeNARows
simCompleteDataCN	simCompleteDataON
simCompleteDataON	simCompleteDataON
simProteinDataSet	simProteinDataSet
voomaLmFitWithImputation	voomaLmFitWithImputation
ZeroTruncatedBinomial	dtbinom
