BioVector               DNAVector, RNAVector, AAVector Objects and
                        BioVector Class
BioVector-class         BioVector, DNAVector, RNAVector and AAVector
                        Classes
ControlInformation-class
                        KeBABS Control Information Class
CrossValidationResult-class
                        Cross Validation Result Class
CrossValidationResultAccessors
                        CrossValidationResult Accessors
ExplicitRepresentation
                        Explicit Representation Dense and Sparse
                        Classes
ExplicitRepresentationAccessors
                        ExplicitRepresentation Accessors
GappyPairKernel-class   Gappy Pair Kernel Class
KBModel-class           KeBABS Model Class
KBModelAccessors        KBModel Accessors
KernelMatrix-class      Kernel Matrix Class
KernelMatrixAccessors   KernelMatrix Accessors
MismatchKernel-class    Mismatch Kernel Class
ModelSelectionResult-class
                        Model Selection Result Class
ModelSelectionResultAccessors
                        ModelSelectionResult Accessors
MotifKernel-class       Motif Kernel Class
PredictionProfile-class
                        Prediction Profile Class
PredictionProfileAccessors
                        PredictionProfile Accessors
ROCData-class           ROC Data Class
ROCDataAccessors        ROCData Accessors
SVMInformation-class    SVM Information Class
SequenceKernel-class    Sequence Kernel Class
SpectrumKernel-class    Spectrum Kernel Class
SymmetricPairKernel-class
                        Symmetric Pair Kernel Class
computeROCandAUC        Compute Receiver Operating Characteristic And
                        Area Under The Curve
evaluatePrediction      Evaluate Prediction
gappyPairKernel         Gappy Pair Kernel
genRandBioSeqs          Generate Random Biological Sequences
getExRep                Explict Representation
getFeatureWeights       Feature Weights
getPredProfMixture,BioVector-method
                        Calculation Of Predicition Profiles for Mixture
                        Kernels
getPredictionProfile,BioVector-method
                        Calculation Of Predicition Profiles
heatmap,PredictionProfile,missing-method
                        Heatmap Methods
kbsvm,BioVector-method
                        KeBABS Training Methods
kebabsCollectInfo       Collect KeBABS Package Information
kebabsData              KeBABS Sequence Data
kebabsDemo              kebabs
linWeight               Position Dependent Kernel
linearKernel            Linear Kernel
mismatchKernel          Mismatch Kernel
motifKernel             Motif Kernel
performCrossValidation,KernelMatrix-method
                        KeBABS Cross Validation
performGridSearch       KeBABS Grid Search
performModelSelection   KeBABS Model Selection
plot,PredictionProfile,missing-method
                        Plot Prediction Profiles, Cross Validation
                        Result, Grid Search Performance Parameters and
                        Receiver Operating Characteristics
predict,KBModel-method
                        KeBABS Prediction Methods
predictSVM              SVM Access for Training and Prediction
seqKernelAsChar         Sequence Kernel
show.BioVector          Display Various KeBABS Objects
showAnnotatedSeq        Annotation Specific Kernel
spectrumKernel          Spectrum Kernel
symmetricPairKernel     Symmetric Pair Kernel
