Package: igblastr
Title: User-friendly R Wrapper to IgBLAST
Description: The igblastr package provides functions to conveniently
        install and use a local IgBLAST installation from within R.
        IgBLAST is described at
        <https://pubmed.ncbi.nlm.nih.gov/23671333/>. IgBLAST web
        interface: <https://www.ncbi.nlm.nih.gov/igblast/>.
biocViews: Immunology, Immunogenetics, ImmunoOncology, CellBiology
URL: https://bioconductor.org/packages/igblastr
BugReports: https://github.com/HyrienLab/igblastr/issues
Version: 1.0.8
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("Hervé", "Pagès", role=c("aut", "cre"),
	       email="hpages.on.github@gmail.com",
	       comment=c(ORCID="0009-0002-8272-4522")),
	person("Ollivier", "Hyrien", role=c("aut", "fnd"),
	       comment=c(ORCID="0000-0003-1909-2542")),
	person("Kellie", "MacPhee", role="ctb",
	       comment=c(ORCID="0009-0008-0993-4009")),
	person("Michael", "Duff", role="ctb",
	       comment=c(ORCID="0009-0008-4279-0756")),
	person("Jason", "Taylor", role="ctb"))
Depends: R (>= 4.2.0), tibble, Biostrings
Imports: methods, utils, stats, tools, R.utils, curl, httr, xml2,
        rvest, xtable, jsonlite, S4Vectors, IRanges, GenomeInfoDb (>=
        1.46.2)
Suggests: GenomicAlignments, parallel, testthat, knitr, rmarkdown,
        BiocStyle, ggplot2, dplyr, scales, ggseqlogo
VignetteBuilder: knitr
Collate: utils.R long_to_wide_airr.R translate_codons.R file-utils.R
        loci-utils.R db-utils.R LATIN_NAMES.R IMGT-utils.R
        IMGT-c_region-utils.R AIRR-utils.R precompiled-igblast-utils.R
        cache-utils.R get_igblast_root.R edit_imgt_file.R
        igblast_info.R update_live_igdata.R auxdata-utils.R
        install_igblast.R make_blastdbs.R create_region_db.R
        create_germline_db.R create_c_region_db.R builtin_db-utils.R
        list_germline_dbs.R list_c_region_dbs.R
        install_IMGT_germline_db.R install_AIRR_germline_db.R
        augment_germline_db.R igblastn-args-utils.R
        read_igblastn_fmt7_output.R read_igblastn_AIRR_output.R
        igblastn.R igbrowser.R summarizeMismatches.R OAS-utils.R zzz.R
Config/pak/sysreqs: libicu-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-12-16 00:56:30 UTC
RemoteUrl: https://github.com/bioc/igblastr
RemoteRef: RELEASE_3_22
RemoteSha: 98ad22505fab53d8be6f84a1f885f67dfa4ddb5b
NeedsCompilation: no
Packaged: 2025-12-16 12:08:05 UTC; root
Author: Hervé Pagès [aut, cre] (ORCID: <https://orcid.org/0009-0002-8272-4522>),
  Ollivier Hyrien [aut, fnd] (ORCID:
    <https://orcid.org/0000-0003-1909-2542>),
  Kellie MacPhee [ctb] (ORCID: <https://orcid.org/0009-0008-0993-4009>),
  Michael Duff [ctb] (ORCID: <https://orcid.org/0009-0008-4279-0756>),
  Jason Taylor [ctb]
Maintainer: Hervé Pagès <hpages.on.github@gmail.com>
Built: R 4.5.2; ; 2025-12-16 12:09:46 UTC; windows
