# Generated by roxygen2: do not edit by hand

export(GenomeIntervals)
export(getGffAttribute)
export(parseGffAttributes)
exportClasses(Genome_intervals)
exportClasses(Genome_intervals_stranded)
exportMethods("$")
exportMethods("[")
exportMethods("[[")
exportMethods("annotation<-")
exportMethods("inter_base<-")
exportMethods("seq_name<-")
exportMethods("seqnames<-")
exportMethods("strand<-")
exportMethods("type<-")
exportMethods(annotation)
exportMethods(c)
exportMethods(coerce)
exportMethods(core_annotated)
exportMethods(distance_to_nearest)
exportMethods(inter_base)
exportMethods(interval_complement)
exportMethods(interval_intersection)
exportMethods(interval_overlap)
exportMethods(interval_union)
exportMethods(rank)
exportMethods(readBasePairFeaturesGff3)
exportMethods(readGff3)
exportMethods(readZeroLengthFeaturesGff3)
exportMethods(seq_name)
exportMethods(seqnames)
exportMethods(show)
exportMethods(size)
exportMethods(sort)
exportMethods(strand)
exportMethods(which_nearest)
exportMethods(width)
exportMethods(writeGff3)
exportMethods(xtfrm)
import(methods)
importClassesFrom(intervals,Intervals_full)
importClassesFrom(intervals,Intervals_virtual)
importClassesFrom(intervals,Intervals_virtual_or_numeric)
importFrom(BiocGenerics,"annotation<-")
importFrom(BiocGenerics,"strand<-")
importFrom(BiocGenerics,Reduce)
importFrom(BiocGenerics,annotation)
importFrom(BiocGenerics,strand)
importFrom(BiocGenerics,width)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(IRanges,IRanges)
importFrom(IRanges,IRangesList)
importFrom(IRanges,SplitDataFrameList)
importFrom(S4Vectors,"elementMetadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,Rle)
importFrom(Seqinfo,"seqnames<-")
importFrom(Seqinfo,seqnames)
importFrom(intervals,"closed<-")
importFrom(intervals,"type<-")
importFrom(intervals,close_intervals)
importFrom(intervals,closed)
importFrom(intervals,distance_to_nearest)
importFrom(intervals,empty)
importFrom(intervals,head)
importFrom(intervals,interval_complement)
importFrom(intervals,interval_intersection)
importFrom(intervals,interval_overlap)
importFrom(intervals,interval_union)
importFrom(intervals,open_intervals)
importFrom(intervals,size)
importFrom(intervals,tail)
importFrom(intervals,type)
importFrom(intervals,which_nearest)
importFrom(utils,write.table)
