coverageObj.scopeDemo	coverageObj.scopeDemo
get_bam_bed	get_bam_bed
get_coverage_scDNA	get_coverage_scDNA
get_gc	get_gc
get_gini	get_gini
get_mapp	get_mapp
get_samp_QC	get_samp_QC
iCN_sim	iCN_sim
initialize_ploidy	initialize_ploidy
initialize_ploidy_group	initialize_ploidy_group
normalize_codex2_ns_noK	normalize_codex2_ns_noK
normalize_scope	normalize_scope
normalize_scope_foreach	normalize_scope_foreach
normalize_scope_group	normalize_scope_group
normObj.scopeDemo	normObj.scopeDemo
perform_qc	perform_qc
plot_EM_fit	plot_EM_fit
plot_iCN	plot_iCN
QCmetric.scopeDemo	QCmetric.scopeDemo
ref.scopeDemo	ref.scopeDemo
ref_sim	ref_sim
segment_CBScs	segment_CBScs
Y_sim	Y_sim
