Binference              Bayesian network inference
CNORfeeder-package      R package to integrate literature-constrained
                        and data-driven methods to infer signalling
                        networks from perturbation experiments
MIinference             Mutual information based network inference
PPINigraph              Protein-protein interaction netwrok
UniprotIDdream          Uniprot identifiers for proteins in DreamModel
buildFeederObjectDynamic
                        Building Feeder-Object for the integration to
                        the PKN
cnolist                 CNOlist
database                OmniPath PPI
feederObject            Feeder Object
gaBinaryT1W             Genetic algorithm used to optimise a model
                        differently weighting links
identifyMisfitIndices   Identifying indices of poorly fitted
                        measurements
indices                 Mis-fit indices
integrateLinks          Integrating the new links to the PKN
integratedModel         Integrated Model
linksRanking            Ranking of links inferred from data
makeBTables             Make Boolean tables
mapBTables2model        Integrate Boolean tables with the model
mapDDN2model            Integrate data-drive network with the model
model                   Prior Knowledge Network
runDynamicFeeder        Modelling the integrated PKN with CNORode
simData                 CNORode simuation data
weighting               Weight integrated links.
