adtProfiles             produce a heatmap from a specialized CITE-seq
                        SingleCellExperiment
anndataR                basic interface to anndata
bsklenv                 python declarations
cacheCiteseq5k10kPbmcs
                        grab scvi-tools-processed PBMC CITE-seq data in
                        anndata format (gzipped) from Open Storage
                        Network
cacheCiteseq5k10kTutvae
                        Deprecated: grab scvi-tools VAE instance built
                        on the PBMC datasets following the tutorial
cacheCiteseqHDPdata     retrieve and cache a 349-protein CITE-seq
                        dataset as employed in scvi-tools tutorial
cacheCiteseqHDPmodel    grab scvi-tools muon-oriented VAE instance
                        built on the PBMC datasets following the
                        tutorial
clusters.adt            ADT-based cluster labels for 7472 cells in OSCA
                        chapter 12 analysis
clusters.rna            mRNA-based cluster labels for 7472 cells in
                        OSCA chapter 12 analysis
exploreSubcl            app to explore diversity in RNA-subclusters
                        within ADT clusters
getCh12AllSce           get list of cluster-specific SCE for 10k PBMC
                        annotated as in OSCA book chapter 12
getCh12Sce              get SCE for 10k PBMC annotated as in OSCA book
                        chapter 12
getCiteseq5k10kPbmcs    helper to get the processed anndata for
                        CITE-seq PBMCs from scvi-tools tutorial
getCiteseqTutvae        helper to get the tutorial VAE for PBMCs from
                        scvi-tools tutorial
getPro5k10kAdata        get an anndata reference to 5k10k protein after
                        totalVI from tutorial
getSubclLM              get lmFit for heterogeneity across subclusters
getSubclusteringFeatures
                        get lmFit F-stat based collection of n genes
                        most varying in mean across subclusters
getTotalVI5k10kAdata    get anndata reference to full totalVI
                        processing of 5k10k data
getTotalVINormalized5k10k
                        get matrices of normalized quantifications from
                        full totalVI 5k10k from tutorial
MuDataR                 basic interface to MuData
muonR                   basic interface to muon
pyHelp2                 helper to get text from python help utility -
                        may need handling through basilisk
scanpyHelper            shiny app that helps access documentation on
                        python-accessible components
scanpyR                 basic interface
scviHelper              shiny app that helps access documentation on
                        python-accessible components
scviR                   basic interface
