# Generated by roxygen2: do not edit by hand

export(generate_permuted_scores)
export(normalise_by_permu)
export(pathway_pert)
export(plot_community)
export(plot_gene_contribution)
export(plot_gs2gene)
export(plot_gs_network)
export(raw_gene_pert)
export(retrieve_topology)
export(weight_ss_fc)
import(SummarizedExperiment)
import(ggforce)
import(ggplot2)
import(ggraph)
import(igraph)
import(methods)
import(org.Hs.eg.db)
importClassesFrom(edgeR,DGEList)
importFrom(dplyr,bind_rows)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(edgeR,cpm)
importFrom(ggraph,geom_edge_arc)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_label)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,geom_node_text)
importFrom(ggraph,ggraph)
importFrom(graphite,convertIdentifiers)
importFrom(graphite,pathways)
importFrom(graphite,prepareSPIA)
importFrom(gtools,permutations)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,degree)
importFrom(igraph,delete_edges)
importFrom(igraph,delete_vertices)
importFrom(igraph,graph.data.frame)
importFrom(igraph,set_edge_attr)
importFrom(igraph,set_vertex_attr)
importFrom(magrittr,set_colnames)
importFrom(pheatmap,pheatmap)
importFrom(reshape2,melt)
importFrom(rlang,"!!")
importFrom(rlang,sym)
importFrom(stats,approxfun)
importFrom(stats,lowess)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,p.adjust.methods)
importFrom(stats,pnorm)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(stringr,str_detect)
importFrom(stringr,str_split)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,drop_na)
importFrom(utils,data)
