annotating              MS annotation
clustering              clustering
correcting              correcting
filtering               Filtering of the features (and/or samples) with
                        a high proportion of NAs or a low variance
gg_barplot              Barplot with ggplot2
gg_boxplot              Boxplot with ggplot2
gg_pie                  Pie with ggplot2
gg_volcanoplot          Volcano plot with ggplot2
hypotesting             Univariate hypothesis testing
inspecting              Inspecting
normalizing             Normalization of the data matrix intensities
phenomis-package        Postprocessing and univariate analysis of omics
                        data
reading                 reading
reducing                Grouping chemically redundant MS1 features
transforming            Transformation of the data matrix intensities
vennplot                Venn diagram with VennDiagram
writing                 Exporting a SummarizedExperiment (or
                        MultiAssayExperiment) instance into (subfolders
                        with) the 3 tabulated files 'dataMatrix.tsv',
                        sampleMetadata.tsv', 'variableMetadata.tsv'
