ace_richness            ACE Richness Estimator
adjacencyMatrix         Adjacency Matrix From Amino Acid or Nucleotide
                        Sequences
amino.acids             Standard 20 amino acids
buildNetwork            Build Edit Distance Network
calculateEntropy        Positional Entropy / Diversity Biological
                        Sequences
calculateFrequency      Relative Residue Frequencies at Every Position
calculateGeneUsage      Quantifcation of Gene-Locus Usage
calculateMotif          Motif Enumeration and Counting
calculateProperty       Position-wise Amino-Acid Property Profiles
chao1_richness          Chao1 Richness Estimator
d50_dom                 D50 Dominance Index
dxx_dom                 Dxx Dominance Index
formatGenes             Ensure clean gene nomenclature using IMGT
                        annotations
generateSequences       Randomly Generate Amino Acid Sequences
getIMGT                 Get IMGT Sequences for Specific Loci
getIR                   Extract Immune Receptor Sequences
gini_coef               Gini Coefficient of Abundance Inequality
gini_simpson            Gini–Simpson Diversity
hill_q                  Hill-Number Generator
immapex_blosum.pam.matrices
                        List of amino acid substitution matrices
immapex_example.data    Example contig data for Apex
immapex_gene.list       A list of IMGT gene names by genes, loci, and
                        species
inferCDR                Infer CDR-loop segments from V-gene calls
inv_simpson             Inverse Simpson Diversity
mutateSequences         Randomly Mutate Sequences of Amino Acids
norm_entropy            Normalised Shannon Entropy
pielou_evenness         Pielou’s Evenness
positionalEncoder       Generate Sinusoidal Positional Encodings
probabilityMatrix       Position Probability Matrix for Amino Acid or
                        Nucleotide Sequences
scaleMatrix             Fast Matrix Scaling or Transformation
sequenceDecoder         Decode Amino Acid or Nucleotide Sequences
sequenceEncoder         Universal Amino-acid Sequence Encoder
shannon_entropy         Shannon Diversity Index (Entropy)
summaryMatrix           Fast Matrix Summaries
tokenizeSequences       Generate Tokenized Sequences from Amino Acid
                        String
