chr_length              Pepper chromosome lengths
gcn                     Simulation of the output list from
                        BioNERO::exp2gcn() with pepper data
gene_ranges             Genomic coordinates of pepper genes
guides                  Guide genes associated with defense and
                        resistance to oomycetes
hubs                    Example hub genes for the network stored in the
                        gcn object
mine2                   Example output from mine_step2()
mine_candidates         Mine high-confidence candidate genes in a
                        single step
mine_step1              Step 1: Get all putative candidate genes for a
                        given sliding window
mine_step2              Step 2: Get candidates in modules enriched in
                        guide genes
mine_step3              Step 3: Select candidates based on gene
                        significance
mined_candidates        Example output from mined_candidates()
pepper_se               Gene expression data from Kim et al., 2018.
plot_snp_circos         Circos plot of SNP distribution across
                        chromosomes
plot_snp_distribution   Plot a barplot of SNP distribution across
                        chromosomes
score_genes             Score candidate genes and select the top n
                        genes
simulate_windows        Simulate number of genes for each sliding
                        window
snp_pos                 Capsicum annuum SNPs associated with resistance
                        to Phytophthora root rot.
tfs                     Pepper transcription factors
