Package: Summix
Title: Summix2: A suite of methods to estimate, adjust, and leverage
        substructure in genetic summary data
Version: 2.16.0
Authors@R: c(person("Audrey", "Hendricks", email = "audrey.hendricks@cuanschutz.edu", role = "cre"), person("Price", "Adelle", email = "adelle.price@cuanschutz.edu", role = "aut"),person("Stoneman", "Haley", email = "hayley.stoneman@cuanschutz.edu", role = "aut"))
Description: This package contains the Summix2 method for estimating and adjusting for substructure in genetic summary allele frequency data. The function summix() estimates reference group proportions using a mixture model. The adjAF() function produces adjusted allele frequencies for an observed group with reference group proportions matching a target individual or sample. The summix_local() function estimates local ancestry mixture proportions and performs selection scans in genetic summary data.
License: MIT + file LICENSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Suggests: rmarkdown, markdown, knitr, testthat (>= 3.0.0)
biocViews: StatisticalMethod, WholeGenome, Genetics
VignetteBuilder: knitr
Encoding: UTF-8
Depends: R (>= 4.3)
Imports: dplyr, nloptr, magrittr, methods, tibble, tidyselect,
        BEDASSLE, scales, visNetwork, randomcoloR
LazyData: true
BugReports: https://github.com/Bioconductor/Summix/issues
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/Summix
git_branch: RELEASE_3_22
git_last_commit: f4f477f
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 05:40:10 UTC; biocbuild
Author: Audrey Hendricks [cre],
  Price Adelle [aut],
  Stoneman Haley [aut]
Maintainer: Audrey Hendricks <audrey.hendricks@cuanschutz.edu>
Built: R 4.5.1; ; 2025-10-30 12:42:46 UTC; unix
