# Generated by roxygen2: do not edit by hand

export(get_bam_bed)
export(get_coverage_scDNA)
export(get_gc)
export(get_gini)
export(get_mapp)
export(get_samp_QC)
export(initialize_ploidy)
export(initialize_ploidy_group)
export(normalize_codex2_ns_noK)
export(normalize_scope)
export(normalize_scope_foreach)
export(normalize_scope_group)
export(perform_qc)
export(plot_EM_fit)
export(plot_iCN)
export(segment_CBScs)
import(BSgenome.Hsapiens.UCSC.hg19)
import(Rsamtools)
import(doParallel)
import(foreach)
import(grDevices)
import(graphics)
import(parallel)
import(stats)
import(utils)
importFrom(BSgenome,start)
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(Biostrings,alphabetFrequency)
importFrom(Biostrings,unmasked)
importFrom(DNAcopy,CNA)
importFrom(DNAcopy,segment)
importFrom(DNAcopy,smooth.CNA)
importFrom(DescTools,AUC)
importFrom(GenomeInfoDb,mapSeqlevels)
importFrom(GenomeInfoDb,seqinfo)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,pintersect)
importFrom(GenomicRanges,tileGenome)
importFrom(IRanges,IRanges)
importFrom(IRanges,Views)
importFrom(IRanges,countOverlaps)
importFrom(IRanges,end)
importFrom(IRanges,findOverlaps)
importFrom(IRanges,width)
importFrom(RColorBrewer,brewer.pal)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(gplots,colorpanel)
importFrom(grDevices,dev.off)
importFrom(grDevices,png)
