# Generated by roxygen2: do not edit by hand

export(computeCorrelationBlocks)
export(doImport)
export(doMethQTL)
export(doMethQTLChromosome)
export(getOverlapUniverse)
export(getOverlappingQTL)
export(getSpecificQTL)
export(joinMethQTLResult)
export(loadMethQTLInput)
export(loadMethQTLResult)
export(overlapInputs)
export(overlapQTLs)
export(qtlAnnotationEnrichment)
export(qtlBaseSubstitutionEnrichment)
export(qtlDistanceScatterplot)
export(qtlGetOption)
export(qtlJSON2options)
export(qtlManhattanPlot)
export(qtlOptions2JSON)
export(qtlPlotBaseSubstitution)
export(qtlPlotClusterSize)
export(qtlPlotSNPCpGInteraction)
export(qtlSetOption)
export(qtlTFBSMotifEnrichment)
export(qtlUpSetPlotCorBlocks)
export(qtlUpSetPlotTagCpGs)
export(qtlUpsetPlot)
export(qtlVennPlot)
exportClasses(MethQTLInput)
exportClasses(MethQTLResult)
exportMethods(filterPval)
exportMethods(getAnno)
exportMethods(getCorrelationBlocks)
exportMethods(getGeno)
exportMethods(getMethData)
exportMethods(getPheno)
exportMethods(getResult)
exportMethods(getResultGWASMap)
exportMethods(getSamples)
exportMethods(imputeMeth)
exportMethods(saveMethQTLInput)
exportMethods(saveMethQTLResult)
import(HDF5Array)
import(RnBeads)
import(RnBeads.hg19)
import(UpSetR)
import(argparse)
import(bigstatsr)
import(crlmm)
import(data.table)
import(doParallel)
import(ff)
import(impute)
import(jsonlite)
import(methods)
import(plyr)
import(snpStats)
importFrom(igraph,cluster_louvain)
importFrom(igraph,graph.adjacency)
importFrom(igraph,groups)
importFrom(stats,anova)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,dnorm)
importFrom(stats,fisher.test)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(utils,download.file)
importFrom(utils,read.table)
importFrom(utils,write.table)
