INDEED                  INDEED: A network-based method for cacner
                        biomarker discovery.
Met_GU                  GU cirrhosis (CIRR) and GU Hepatocellular
                        carcinoma (HCC) data.
Met_Group_GU            Group label.
Met_name_GU             KEGG ID
choose_rho              Draw error curve
compute_cor             Compute the correlation
compute_dns             Calculate the differential network score
compute_par             Compute the partial correlation
loglik_ave              Create log likelihood error
network_display         Interactive Network Visualization
non_partial_cor         Non-partial correlaton analysis
partial_cor             Partial correlaton analysis
permutation_cor         Permutations to build a differential network
                        based on correlation analysis
permutation_pc          Permutations to build differential network
                        based on partial correlation analysis
permutation_thres       Calculate the positive and negative thresholds
                        based on the permutation result
pvalue_M_GU             P-values obtained by differential expression
                        (DE) analysis.
pvalue_logit            Obtain p-values using logistic regression
scale_range             Scale list of numbers
select_rho_partial      Data preprocessing for partial correlaton
                        analysis
