# Generated by roxygen2: do not edit by hand

export(adjusting_HLToInt)
export(figures_fun)
export(fragmentation)
export(gff3_preprocess)
export(joining_data_column)
export(joining_data_row)
export(loading_fun)
export(make_pen)
export(penalties)
export(rifi_visualization_comparison)
export(statistics)
import(DTA)
import(LSD)
import(SummarizedExperiment)
import(dplyr)
import(ggplot2)
import(ggrepel)
import(scales)
import(writexl)
importFrom(LSD,heatscatter)
importFrom(S4Vectors,decode)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,rowRanges)
importFrom(cowplot,background_grid)
importFrom(doMC,registerDoMC)
importFrom(dplyr,between)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,summarise)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(ggplot2,ggplot)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,pdf.options)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,curve)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(grid,arrow)
importFrom(grid,gpar)
importFrom(grid,textGrob)
importFrom(grid,unit)
importFrom(methods,is)
importFrom(nnet,which.is.max)
importFrom(parallel,mclapply)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(rlang,is_empty)
importFrom(rtracklayer,readGFF)
importFrom(scales,alpha)
importFrom(stats,deviance)
importFrom(stats,na.omit)
importFrom(stats,nls)
importFrom(stats,p.adjust)
importFrom(stats,quantile)
importFrom(stats,residuals)
importFrom(stats,sd)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(stringr,str_extract)
importFrom(stringr,str_split)
importFrom(tibble,add_row)
importFrom(utils,data)
