RNAattributes           Overlap the genomic features related to the
                        sRNA clusters
RNAdf2se                Convert a 'mobileRNA' dataframe to a
                        SummarizedExperiment object
RNAdicercall            Define the consensus dicercall for each sRNA
                        cluster
RNAdifferentialAnalysis
                        Differential Analysis using 'DESeq2' or 'edgeR'
RNAdistribution         Plot the distribution of sRNA classes based on
                        nucleotide length
RNAfeatures             Summarise the distribution of sRNA clusters
                        across genomic features
RNAimport               Import and organise sRNAseq & mRNAseq data sets
RNAmergeAnnotations     Merge two genome annotation files (GFF Format)
RNAmergeGenomes         Merge two genome reference assemblies (FASTA
                        format)
RNAmobile               Identify putative RNA molecules produced by the
                        non-tissue sample genome
RNApopulation           Identify gained/lost RNA populations between
                        treatment and control conditions
RNAreorder              Reorder the data frame for differential
                        analysis, ensuring control verse treatment
                        comparison
RNAsequences            Extract RNA sequence from sRNA clusters
RNAsubset               Subset sRNA data based on dicercall size
RNAsummary              Summarise differential analysis results
mRNA_data               mRNA_data: simulated messenger RNA data for
                        biological replicates
mapRNA                  mobileRNA pre-processing method for sRNAseq &
                        mRNAseq (alignment, raw count or cluster
                        analysis)
plotHeatmap             Heatmap of log-transformed normalization data
plotRNAfeatures         Plots the distribution of genomic features in
                        the genome and those that overlap with sRNA
                        clusters
plotSampleDistance      Sample distance matrix
plotSamplePCA           PCA plot of PC1 and PC2
sRNA_data               sRNA_data: simulated data for biological
                        replicates
