gDNAx-package	gDNAx-package
allStrandModes	gDNAx-class
allStrandModes,gDNAx-method	gDNAx-class
classifyStrandMode	strandedness
filterBAMtx	filterBAMtx
filterBAMtxFlag	filterBAMtx
gDNAdx	gDNAdx
gDNAtx	gDNAtx
gDNAx	gDNAx-package
gDNAx-class	gDNAx-class
gDNAx-pkg-deprecated	gDNAx-pkg-deprecated
getDx	gDNAx-class
getDx,gDNAx-method	gDNAx-class
getIgc	gDNAx-class
getIgc,gDNAx-method	gDNAx-class
getInt	gDNAx-class
getInt,gDNAx-method	gDNAx-class
identifyStrandMode	strandedness
plot,gDNAx,ANY-method	gDNAdx
plotAlnOrigins	gDNAdx
plotFrgLength	gDNAdx
show	gDNAx-class
show,gDNAx-method	gDNAx-class
singleEnd	gDNAx-class
singleEnd,gDNAx-method	gDNAx-class
strandedness	gDNAx-class
strandedness,BamFileList-method	strandedness
strandedness,character-method	strandedness
strandedness,gDNAx-method	gDNAx-class
strandMode	gDNAx-class
strandMode,gDNAx-method	gDNAx-class
strandMode<-	gDNAx-class
strandMode<-,gDNAx-method	gDNAx-class
strnessByFeature	strandedness
testBAMtxFlag	filterBAMtx
