demo_airr               Example AIRR Dataset for V(D)J Analysis
demo_sce                Example SCE Dataset that does not contain V(D)J
                        information
differentiationProbabilities
                        Compute Branch Probabilities Using Markov Chain
markovProbability       Markov Chain Construction and Probability
                        Calculation
miloUmap                Perform UMAP on the Adjacency Matrix of a Milo
                        Object
projectProbability      Project Probabilities from Markov Chain to
                        Pseudobulks
projectPseudotimeToCell
                        Project Pseudotime and Branch Probabilities to
                        Single Cells
project_single_value    Function to project pseudobulk-level values to
                        single-cell level
sce_vdj                 Example Dataset for V(D)J Analysis
setupVdjPseudobulk      Preprocess V(D)J Data for Pseudobulk Analysis
vdjPseudobulk           Generate Pseudobulk V(D)J Feature Space
