ID-translation          Translate study identifiers from barcode to
                        UUID and vice versa
TCGAbarcode             Parse data from TCGA barcode
TCGAbiospec             Extract biospecimen data from the TCGA barcode
TCGAprimaryTumors       Select primary tumors from TCGA datasets
TCGAsampleSelect        Select samples from barcodes from lookup table
TCGAutils-package       TCGAutils: Helper functions for working with
                        TCGA and MultiAssayExperiment data
builds                  Utilities for working with _HUMAN_ genome
                        builds
clinicalNames           Clinical dataset names in TCGA
curatedTCGAData-helpers
                        Helper functions for managing
                        MultiAssayExperiment from curatedTCGAData
diseaseCodes            TCGA Cancer Disease Codes Table
findGRangesCols         Obtain minimum necessary names for the creation
                        of a GRangesList object
generateMap             Create a sampleMap from an experiment list and
                        phenoData dataframe
getFileName             Find the file names used in RTCGAToolbox
imputeAssay             This function imputes assays values inside a
                        'MultiAssayExperiment'
makeGRangesListFromCopyNumber
                        Make a GRangesList from TCGA Copy Number data
makeGRangesListFromExonFiles
                        Read exon-level expression files and create a
                        'GRangesList'
mergeColData            Take a MultiAssayExperiment and include curated
                        variables
oncoPrintTCGA           OncoPrint for TCGA Mutation Assays
sampleTypes             Barcode Sample Type Table
simplifyTCGA            Functions to convert rows annotations to ranges
                        and RaggedExperiment to
                        RangedSummarizedExperiment
simplifyTCGA-defunct    Defunct TCGAutils functions
trimColData             Minimize the number of variables in colData
