Package: HiCParser
Type: Package
Title: Parser for HiC data in R
Date: 2025-07-22
Version: 1.2.0
URL: https://github.com/emaigne/HiCParser
BugReports: https://github.com/emaigne/HiCParser/issues
Authors@R: c(
    person("Zytnicki", "Matthias", email = "matthias.zytnicki@inrae.fr", 
      role = c("aut")),
    person("Maigné", "Élise", email = "elise.maigne@inrae.fr", 
      role = c("aut", "cre")))
Description: 
    This package is a parser to import HiC data into R.
    It accepts several type of data: tabular files, Cooler `.cool` or 
    `.mcool` files, Juicer `.hic` files or HiC-Pro `.matrix` and `.bed` files.
    The HiC data can be several files, for several replicates and conditions.
    The data is formated in an InteractionSet object.
License: LGPL
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
biocViews: Software, HiC, DataImport
Imports: data.table, InteractionSet, GenomicRanges,
        SummarizedExperiment, Rcpp (>= 1.0.12), S4Vectors, gtools,
        pbapply, BiocGenerics, Seqinfo
LinkingTo: Rcpp
Suggests: rhdf5, BiocStyle, knitr, sessioninfo, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/HiCParser
git_branch: RELEASE_3_22
git_last_commit: c089341
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: yes
Packaged: 2025-10-30 03:04:20 UTC; biocbuild
Author: Zytnicki Matthias [aut],
  Maigné Élise [aut, cre]
Maintainer: Maigné Élise <elise.maigne@inrae.fr>
Built: R 4.5.1; aarch64-apple-darwin20; 2025-10-30 09:27:39 UTC; unix
