.extractPriMiRNA	dot-extractPriMiRNA
.getComp	dot-getComp
.getMetGroup	dot-getMetGroup
.mapProbeGene	dot-mapProbeGene
.splitMetData	dot-splitMetData
addDistNearestTSS	addDistNearestTSS
addGeneNames	addGeneNames
BatchCorrection_Combat	BatchCorrection_Combat
BatchCorrection_Seurat	BatchCorrection_Seurat
betaEst_2	betaEst_2
blc_2	blc_2
calcDistNearestTSS	calcDistNearestTSS
ClusterProbes	ClusterProbes
ComBat_NoFiles	ComBat_NoFiles
combineForEachOutput	combineForEachOutput
convertAnnotToDF	convertAnnotToDF
convertGeneNames	convertGeneNames
CorrectBatchEffect	CorrectBatchEffect
EpiMix	EpiMix
EpiMix_getInfiniumAnnotation	EpiMix_getInfiniumAnnotation
EpiMix_PlotGene	EpiMix_PlotGene
EpiMix_PlotModel	EpiMix_PlotModel
EpiMix_PlotProbe	EpiMix_PlotProbe
EpiMix_PlotSurvival	EpiMix_PlotSurvival
filterLinearProbes	filterLinearProbes
filterMethMatrix	filterMethMatrix
filterProbes	filterProbes
find_miRNA_targets	find_miRNA_targets
functionEnrich	functionEnrich
generateFunctionalPairs	generateFunctionalPairs
GEO_Download_DNAMethylation	GEO_Download_DNAMethylation
GEO_Download_GeneExpression	GEO_Download_GeneExpression
GEO_EstimateMissingValues_Methylation	GEO_EstimateMissingValues_Methylation
GEO_EstimateMissingValues_Molecular	GEO_EstimateMissingValues_Molecular
GEO_GetSampleInfo	GEO_GetSampleInfo
GEO_getSampleMap	GEO_getSampleMap
get.chromosome	get.chromosome
get.prevalence	get.prevalence
Get.Pvalue.p	Get.Pvalue.p
getFeatureProbe	getFeatureProbe
getFunctionalGenes	getFunctionalGenes
getLncRNAData	getLncRNAData
getMethStates	getMethStates
getMethStates_Helper	getMethStates_Helper
GetNearGenes	GetNearGenes
getProbeAnnotation	getProbeAnnotation
getRandomGenes	getRandomGenes
getRegionNearGenes	getRegionNearGenes
getRoadMapEnhancerProbes	getRoadMapEnhancerProbes
GetSurvivalProbe	GetSurvivalProbe
getTSS	getTSS
get_firehoseData	get_firehoseData
mapTranscriptToGene	mapTranscriptToGene
MethylMix_MixtureModel	MethylMix_MixtureModel
MethylMix_ModelSingleGene	MethylMix_ModelSingleGene
MethylMix_Predict	MethylMix_Predict
MethylMix_RemoveFlipOver	MethylMix_RemoveFlipOver
predictOneGene	predictOneGene
Preprocess_CancerSite_Methylation27k	Preprocess_CancerSite_Methylation27k
Preprocess_DNAMethylation	Preprocess_DNAMethylation
Preprocess_GeneExpression	Preprocess_GeneExpression
Preprocess_MAdata_Cancer	Preprocess_MAdata_Cancer
Preprocess_MAdata_Normal	Preprocess_MAdata_Normal
removeDuplicatedGenes	removeDuplicatedGenes
splitmatrix	splitmatrix
TCGA_Download_DNAmethylation	TCGA_Download_DNAmethylation
TCGA_Download_GeneExpression	TCGA_Download_GeneExpression
TCGA_EstimateMissingValues_MolecularData	TCGA_EstimateMissingValues_MolecularData
TCGA_GENERIC_CheckBatchEffect	TCGA_GENERIC_CheckBatchEffect
TCGA_GENERIC_CleanUpSampleNames	TCGA_GENERIC_CleanUpSampleNames
TCGA_GENERIC_GetSampleGroups	TCGA_GENERIC_GetSampleGroups
TCGA_GENERIC_LoadIlluminaMethylationData	TCGA_GENERIC_LoadIlluminaMethylationData
TCGA_GENERIC_MergeData	TCGA_GENERIC_MergeData
TCGA_GENERIC_MET_ClusterProbes_Helper_ClusterGenes_with_hclust	TCGA_GENERIC_MET_ClusterProbes_Helper_ClusterGenes_with_hclust
TCGA_GetData	TCGA_GetData
TCGA_GetSampleInfo	TCGA_GetSampleInfo
TCGA_Load_MethylationData	TCGA_Load_MethylationData
TCGA_Load_MolecularData	TCGA_Load_MolecularData
TCGA_Preprocess_DNAmethylation	TCGA_Preprocess_DNAmethylation
TCGA_Preprocess_GeneExpression	TCGA_Preprocess_GeneExpression
TCGA_Process_EstimateMissingValues	TCGA_Process_EstimateMissingValues
TCGA_Select_Dataset	TCGA_Select_Dataset
test_gene_expr	test_gene_expr
translateMethylMixResults	translateMethylMixResults
validEpigenomes	validEpigenomes
