etec16s
This is the development version of etec16s; for the stable release version, see etec16s.
Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment
Bioconductor version: Development (3.21)
16S rRNA gene sequencing data to study changes in the faecal microbiota of 12 volunteers during a human challenge study with ETEC (H10407) and subsequent treatment with ciprofloxacin.
Author: Joseph N. Paulson
Maintainer: Joseph N. Paulson <jpaulson at jimmy.harvard.edu>
citation("etec16s")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("etec16s")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("etec16s")| etec16s | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, MicrobiomeData, SequencingData |
| Version | 1.35.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.3), Biobase, metagenomeSeq(>= 1.12.0) |
| Imports | |
| System Requirements | |
| URL |
See More
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| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | etec16s_1.35.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/etec16s |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/etec16s |
| Package Short Url | https://bioconductor.org/packages/etec16s/ |
| Package Downloads Report | Download Stats |