Changes in version 1.5                         

CTdata 1.5.3

  - Correction of a bug in mean_methylation_in_embryo and
    mean_methylation_in_FGC datasets
  - Vignette update

CTdata 1.5.2

  - Correction of an error in the upload

CTdata 1.5.1

  - Used more stringent threshold to define genes activated in CCLE cell
    lines ang in TCGA tumors (TPM > 1 in at least 1% of tumors and
    cancer cell lines, and TPM > 5 in at least one tumor and cancer cell
    line)
  - Changed selection criteria of testis-specific and
    testis-preferential genes in GTEX
  - Added a slightly more stringent criteria of selection of
    testis-specific genes when analysing RNAseq data of normal tissues
    with multimapping
  - Minor modifications in selection of genes induced by DAC
  - Set TCGA_catgeory in TCGA_TPM to "leaky" when the q75 expression in
    normal peritumoral TCGA samples is higher than 0.5
  - Added HPA_cell_type_specificity (a table giving cell type
    specificity of each genes based on Human protein Atlas scRNAseq
    data)
  - Added FGC_sce, scRNAseq data of human fetal gonads
  - Added oocytes_sce, scRNAseq data of human oocytes
  - Changed preliminary CT_list into all_genes_prelim list to add the
    characterisation to all genes and not only CT in the package
  - Changed criteria for testis specificity, including HPA/TCGA/CCLE
    category in the definition
  - Added CT_gene_type column to differentiate CT genes and CT
    preferential genes
  - Included all genes in methylation objects (methylation_in_tissues,
    mean_methylation_in_tissues and TCGA_methylation)
  - Added all_genes containing all the characterisation and analysis for
    all genes
  - Changed the criteria for regulation by methylation, needing DAC
    induction and methylation in somatic only
  - Reordered CT_genes and all_genes
  - Changed all documentation
  - Added embryo, FGC and hESC data

CTdata 1.5.0

  - New devel

                         Changes in version 1.4                         

CTdata 1.4.0

  - New release Bioc 3.19

                         Changes in version 1.1                         

CTdata 1.1.5

  - Assay from CT_methylation_in_tissues() converted from a tibble to a
    matrix.
  - Suggest and load SingleCellExperiment in vignette.
  - Update vignette figure.

CTdata 1.1.4

  - New data: scRNAseq_HPA and testis_sce.
  - Updated data: CT_methylation_in_tissues,
    CT_mean_methylation_in_tissues, TCGA_CT_methylation, CT_genes and
    CCLE_correlation_matrix.

CTdata 1.1.3

  - Load SummarizedExperiment in vignette.

CTdata 1.1.2

  - Suggest SummarizedExperiment.

CTdata 1.1.1

  - Only display a small subset of CCLE_correlation_matrix() in the
    vignette.

CTdata 1.1.0

  - New Bioconductor devel release.

                        Changes in version 0.99                         

CTdata 0.99.0

  - Package submission to Biocoductor.