tidyFlowCore
This is the development version of tidyFlowCore; for the stable release version, see tidyFlowCore.
tidyFlowCore: Bringing flowCore to the tidyverse
Bioconductor version: Development (3.21)
tidyFlowCore bridges the gap between flow cytometry analysis using the flowCore Bioconductor package and the tidy data principles advocated by the tidyverse. It provides a suite of dplyr-, ggplot2-, and tidyr-like verbs specifically designed for working with flowFrame and flowSet objects as if they were tibbles; however, your data remain flowCore data structures under this layer of abstraction. tidyFlowCore enables intuitive and streamlined analysis workflows that can leverage both the Bioconductor and tidyverse ecosystems for cytometry data.
Author: Timothy Keyes [cre] (ORCID:
Maintainer: Timothy Keyes <tkeyes at stanford.edu>
citation("tidyFlowCore")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("tidyFlowCore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tidyFlowCore")| tidyFlowCore | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | FlowCytometry, Infrastructure, SingleCell, Software |
| Version | 1.1.0 |
| In Bioconductor since | BioC 3.20 (R-4.4) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.3) |
| Imports | Biobase, dplyr, flowCore, ggplot2, methods, purrr, rlang, stats, stringr, tibble, tidyr |
| System Requirements | |
| URL | https://github.com/keyes-timothy/tidyFlowCore https://keyes-timothy.github.io/tidyFlowCore/ |
| Bug Reports | https://github.com/keyes-timothy/tidyFlowCore/issues |
See More
| Suggests | BiocStyle, HDCytoData, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tidyFlowCore_1.1.0.tar.gz |
| Windows Binary (x86_64) | tidyFlowCore_1.1.0.zip (64-bit only) |
| macOS Binary (x86_64) | tidyFlowCore_1.1.0.tgz |
| macOS Binary (arm64) | tidyFlowCore_1.1.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tidyFlowCore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tidyFlowCore |
| Bioc Package Browser | https://code.bioconductor.org/browse/tidyFlowCore/ |
| Package Short Url | https://bioconductor.org/packages/tidyFlowCore/ |
| Package Downloads Report | Download Stats |