rWikiPathways
This is the development version of rWikiPathways; for the stable release version, see rWikiPathways.
rWikiPathways - R client library for the WikiPathways API
Bioconductor version: Development (3.21)
Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.
Author: Egon Willighagen [aut, cre] (ORCID:
Maintainer: Egon Willighagen <egon.willighagen at gmail.com>
citation("rWikiPathways")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rWikiPathways")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rWikiPathways")| 1. Overview | HTML | R Script |
| 2. rWikiPathways and BridgeDbR | HTML | R Script |
| 3. rWikiPathways and RCy3 | HTML | R Script |
| 4. Pathway Analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization |
| Version | 1.27.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | httr, utils, XML, rjson, data.table, RCurl, dplyr, tidyr, readr, stringr, purrr, lubridate |
| System Requirements | |
| URL | https://github.com/wikipathways/rwikipathways |
| Bug Reports | https://github.com/wikipathways/rwikipathways/issues |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | famat, RVA |
| Suggests Me | TRONCO |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rWikiPathways_1.27.0.tar.gz |
| Windows Binary (x86_64) | rWikiPathways_1.27.0.zip (64-bit only) |
| macOS Binary (x86_64) | rWikiPathways_1.27.0.tgz |
| macOS Binary (arm64) | rWikiPathways_1.27.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rWikiPathways |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rWikiPathways |
| Bioc Package Browser | https://code.bioconductor.org/browse/rWikiPathways/ |
| Package Short Url | https://bioconductor.org/packages/rWikiPathways/ |
| Package Downloads Report | Download Stats |