TEQC
This is the development version of TEQC; for the stable release version, see TEQC.
Quality control for target capture experiments
Bioconductor version: Development (3.21)
Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.
Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma
Maintainer: Sarah Bonnin <Sarah.Bonnin at crg.eu>
citation("TEQC")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TEQC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TEQC")| TEQC | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Genetics, Microarray, QualityControl, Sequencing, Software |
| Version | 4.29.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13.5 years) |
| License | GPL (>= 2) |
| Depends | methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.5), Rsamtools, hwriter |
| Imports | Biobase(>= 2.15.1) |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TEQC_4.29.0.tar.gz |
| Windows Binary (x86_64) | TEQC_4.29.0.zip (64-bit only) |
| macOS Binary (x86_64) | TEQC_4.29.0.tgz |
| macOS Binary (arm64) | TEQC_4.29.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TEQC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TEQC |
| Bioc Package Browser | https://code.bioconductor.org/browse/TEQC/ |
| Package Short Url | https://bioconductor.org/packages/TEQC/ |
| Package Downloads Report | Download Stats |