GOstats
This is the development version of GOstats; for the stable release version, see GOstats.
Tools for manipulating GO and microarrays
Bioconductor version: Development (3.21)
A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.
Author: Robert Gentleman [aut], Seth Falcon [ctb], Robert Castelo [ctb], Sonali Kumari [ctb] (Converted vignettes from Sweave to R Markdown / HTML.), Dennis Ndubi [ctb] (Converted GOstatsHyperG vignette from Sweave to R Markdown / HTML.), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("GOstats")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GOstats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOstats")| How To Use GOstats and Category to do Hypergeometric testing with unsupported model organisms | HTML | R Script |
| Hypergeometric Tests Using GOstats | HTML | R Script |
| Visualizing and Distances Using GO | HTML | R Script |
| Reference Manual |
Details
| biocViews | Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software |
| Version | 2.73.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.43.2), graph |
| Imports | methods, stats, stats4, AnnotationDbi(>= 0.0.89), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), AnnotationForge, Rgraphviz |
| System Requirements | |
| URL |
See More
| Suggests | hgu95av2.db(>= 1.13.0), ALL, multtest, genefilter, RColorBrewer, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics, BiocStyle, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | MineICA |
| Imports Me | affycoretools, attract, categoryCompare, GmicR, ideal, miRLAB, pcaExplorer, scTensor, SGCP, DNLC |
| Suggests Me | a4, Category, fastLiquidAssociation, fgga, GSEAlm, interactiveDisplay, MineICA, MLP, qpgraph, RnBeads, safe, maGUI, sand |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GOstats_2.73.0.tar.gz |
| Windows Binary (x86_64) | GOstats_2.73.0.zip (64-bit only) |
| macOS Binary (x86_64) | GOstats_2.73.0.tgz |
| macOS Binary (arm64) | GOstats_2.73.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GOstats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOstats |
| Bioc Package Browser | https://code.bioconductor.org/browse/GOstats/ |
| Package Short Url | https://bioconductor.org/packages/GOstats/ |
| Package Downloads Report | Download Stats |