CRISPRball

This is the development version of CRISPRball; for the stable release version, see CRISPRball.

Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

Bioconductor version: Development (3.21)

A Shiny application for visualization, exploration, comparison, and filtering of CRISPR screens analyzed with MAGeCK RRA or MLE. Features include interactive plots with on-click labeling, full customization of plot aesthetics, data upload and/or download, and much more. Quickly and easily explore your CRISPR screen results and generate publication-quality figures in seconds.

Author: Jared Andrews [aut, cre] (ORCID: ), Jacob Steele [ctb] (ORCID: )

Maintainer: Jared Andrews <jared.andrews07 at gmail.com>

Citation (from within R, enter citation("CRISPRball")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CRISPRball")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CRISPRball")

CRISPRball Quick Start	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CRISPR, GUI, QualityControl, ShinyApps, Software, Visualization
Version	1.3.1
In Bioconductor since	BioC 3.19 (R-4.4) (0.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.4.0), shinyBS
Imports	DT, shiny, grid, ComplexHeatmap, InteractiveComplexHeatmap, graphics, stats, ggplot2, plotly, shinyWidgets, shinycssloaders, shinyjqui, dittoSeq, matrixStats, colourpicker, shinyjs, circlize, PCAtools, utils, grDevices, htmlwidgets, methods
System Requirements
URL	https://github.com/j-andrews7/CRISPRball
Bug Reports	https://support.bioconductor.org/

Suggests	BiocStyle, msigdbr, depmap, pool, RSQLite, mygene, testthat (>= 3.0.0), knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CRISPRball_1.3.1.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)	CRISPRball_1.3.1.tgz
macOS Binary (arm64)	CRISPRball_1.3.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CRISPRball
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CRISPRball
Bioc Package Browser	https://code.bioconductor.org/browse/CRISPRball/
Package Short Url	https://bioconductor.org/packages/CRISPRball/
Package Downloads Report	Download Stats