Changes in version 1.22.2 (2026-07-22)
+ Updated the secondary structure prediction functions to use new web services, following the discontinuation of the ncrna.org/rtools server. centroidFold now uses the ViennaRNA RNAfold web server, IPknot the IPknot web server at the Sato lab, centroidHomFold the Rfam batch search, and predictAlternativeSecondaryStructures the MC-Fold web server

Changes in version 1.1.1 (2021-05-04)
+ Fixed a bug causing endless queries in Ubuntu 20.04 when a firewall was present

Changes in version 0.99.9 (2020-10-01)
+ Reverted changes introduced in 0.99.6 
+ Set SSL security level to 1 in Linux environment to bypass a bug in OpenSSL 1.1.1

Changes in version 0.99.6 (2020-09-29)
+ Changed all URLs to http to prevent issues when accessing websites via HTTPS due to a bug in OpenSSL 1.1.1

Changes in version 0.99.4 (2020-09-07)
+ Introduced changes suggested during Bioconductor review

Changes in version 0.99.0 (2020-07-24)
+ Submitted to Bioconductor