Type: Package
Package: curatedTCGAData
Title: Curated Data from The Cancer Genome Atlas (TCGA) as
        MultiAssayExperiment Objects
Version: 1.32.0
Authors@R: c(
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu",
        c("aut", "cre"), c(ORCID = "0000-0002-3242-0582")),
    person("Levi", "Waldron", , "lwaldron.research@gmail.com", "ctb"),
    person("Lucas", "Schiffer", , "schiffer.lucas@gmail.com", "ctb"),
    person("Ludwig", "Geistlinger", , "ludwig.geistlinger@sph.cuny.edu", "ctb"),
    person("Valerie", "Obenchain", , "valerie.obenchain@roswellpark.org","ctb"),
    person("Martin", "Morgan", , "martin.morgan@roswellpark.org", "ctb")
  )
Description: This package provides publicly available data from The Cancer
    Genome Atlas (TCGA) as MultiAssayExperiment objects.
    MultiAssayExperiment integrates multiple assays (e.g., RNA-seq, copy
    number, mutation, microRNA, protein, and others) with clinical /
    pathological data.  It also links assay barcodes with patient
    identifiers, enabling harmonized subsetting of rows (features) and
    columns (patients / samples) across the entire multi-'omics
    experiment.
License: Artistic-2.0
BugReports: https://github.com/waldronlab/curatedTCGAData/issues
Depends: R (>= 4.5.0), MultiAssayExperiment
Imports: AnnotationHub, ExperimentHub, HDF5Array, methods, S4Vectors,
        stats, SummarizedExperiment, utils
Suggests: BiocStyle, knitr, RaggedExperiment, readr, rmarkdown,
        TCGAutils, testthat
VignetteBuilder: knitr
biocViews: Homo_sapiens_Data, ReproducibleResearch, CancerData,
        ExperimentHub
Encoding: UTF-8
RoxygenNote: 7.3.2
Date: 2024-11-13
git_url: https://git.bioconductor.org/packages/curatedTCGAData
git_branch: RELEASE_3_22
git_last_commit: 87ef388
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-11-06
NeedsCompilation: no
Packaged: 2025-11-06 16:14:46 UTC; biocbuild
Author: Marcel Ramos [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3242-0582>),
  Levi Waldron [ctb],
  Lucas Schiffer [ctb],
  Ludwig Geistlinger [ctb],
  Valerie Obenchain [ctb],
  Martin Morgan [ctb]
Maintainer: Marcel Ramos <marcel.ramos@sph.cuny.edu>
