Package: Single.mTEC.Transcriptomes
Type: Package
Title: Single Cell Transcriptome Data and Analysis of Mouse mTEC cells
Version: 1.38.0
Date: 2025-07-28
Author: Alejandro Reyes
Maintainer: Alejandro Reyes <alejandro.reyes.ds@gmail.com>
Description: This data package contains the code used to analyse the single-cell 
    RNA-seq and the bulk ATAC-seq data from the manuscript titled: Single-cell transcriptome
    analysis reveals coordinated ectopic-gene expression patterns in medullary thymic epithelial
    cells. This paper was published in Nature Immunology 16,933-941(2015). The data objects
    provided in this package has been pre-processed: the raw data files can be downloaded from
    ArrayExpress under the accession identifiers E-MTAB-3346 and E-MTAB-3624. The vignette of 
    this data package provides a documented and reproducible workflow that includes the code 
    that was used to generate each statistic and figure from the manuscript.
License: LGPL
biocViews: ExperimentData
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
Suggests: DESeq2, GenomicRanges, GenomicFeatures, genefilter, statmod,
        gdata, RColorBrewer, ggplot2, gplots, cluster, clue, grid,
        gridExtra, ggbio, Gviz, geneplotter, matrixStats, pheatmap,
        BiocStyle, knitr, BiocParallel
RoxygenNote: 5.0.1
NeedsCompilation: no
git_url:
        https://git.bioconductor.org/packages/Single.mTEC.Transcriptomes
git_branch: RELEASE_3_22
git_last_commit: a2d5fc4
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-11-04
Packaged: 2025-11-04 16:48:44 UTC; biocbuild
